PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG101000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 333aa MW: 37764.6 Da PI: 7.8065 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 48.3 | 3.3e-15 | 51 | 130 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +f+n Y+ e+GF +r +s+++ +g+ t+++ vC +eg++ + + k + +gC ++++ +++d+ w++++++++HnH+la Pavir.8KG101000.1.p 51 EFFNMYSWELGFGIRFGRSRSN-ISGRRTRQDIVCACEGRDGSPDAK---------SVCCGCAVMIRLLRKDDDSWYISRFVSNHNHPLA 130 6****************98887.8889*************9998877.........899*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.3E-12 | 51 | 130 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.3E-15 | 253 | 317 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MCSEPDGVRL PASWNYGAIE RALRGAHARG DRSIFELEEG KIFDSPQEGF EFFNMYSWEL 60 GFGIRFGRSR SNISGRRTRQ DIVCACEGRD GSPDAKSVCC GCAVMIRLLR KDDDSWYISR 120 FVSNHNHPLA STCGERRQWK SHSRIDQMTR DLVKNLRANN VQISRVCSIL GSMHGSSSYV 180 PFSRQSIRTL CGRLAQESIE GDMSKTLGLF TSMRERDPAM VIRMQLDDEK RIKSLFWCHG 240 SSRFNYSCFG DAITFDTTYR TNLYNLPFGL FVGANHPFQT IIFGAVLLTE ETTDAFQWTF 300 RTFVEAMDGQ HPRTILTVPG YENCDCYGAT NQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG101000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822596.1 | 1e-114 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_025822597.1 | 1e-114 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | K4A135 | 1e-130 | K4A135_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ab00163.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 1e-38 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG101000.1.p |