PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG092000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 452aa    MW: 47163 Da    PI: 7.1953
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG092000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17355387133
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                          Cs+C++ +Tp+WR gpdg+ tLCnaCG++y+ +
  Pavir.8KG092000.1.p 355 CSHCHSPDTPQWRAGPDGPGTLCNACGIRYAAN 387
                          ******************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.596349387IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-16349403IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.42E-14351412No hitNo description
Gene3DG3DSA:3.30.50.104.4E-14353389IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.89E-15354410No hitNo description
PROSITE patternPS003440355380IPR000679Zinc finger, GATA-type
PfamPF003201.8E-15355388IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MRTQSHLSLR DVPEDLPDCD GGCFRPGGGL CCPDDPLDLV LHFFSTPSPR EASLEALGIR  60
GSPRRQEEQP PPPPPLLGWD QESGLGGVRI LGGGGCGEPE SGRAPEDAEP VDVDKYLVTV  120
PPDGGGGAEA TVRNNPDRDT PGGIPAAVPA AGGVRACGAL GGVVSNGALL LLPPVSAGAL  180
HHQYTFDGGV ASDVAPPLLA LMPAGGGVGF ASDVAPPVPA GALHACRALV AGAGSNDAPP  240
SWALAPPPAW ALPASRASSG CLTPATSETS SPAPVWRPLA WPVPRKRRRP PVERRKRPWS  300
LEFPLHALQA APPDNPGDSN GDEDAKNSCD NAGGGGIRRR RPVPRQRNRQ AQRVCSHCHS  360
PDTPQWRAGP DGPGTLCNAC GIRYAANKLL PEYRPSTAPS FRSDQHSNRH RKVVKLREQK  420
AKETQAMPDP VTPPPPKSDE FMDVCTYIST G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283289PRKRRRP
2284288RKRRR
3284297RKRRRPPVERRKRP
4285296KRRRPPVERRKR
5338345RRRPVPRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG092000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432160.0AC243216.1 Panicum virgatum clone PV_ABa003-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7CKY50.0A0A2T7CKY5_9POAL; Uncharacterized protein
STRINGPavir.Hb01505.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16076913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.14e-26GATA transcription factor 4