PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG084800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GATA | ||||||||
Protein Properties | Length: 452aa MW: 47126.9 Da PI: 7.4294 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.8 | 1.3e-17 | 355 | 387 | 1 | 33 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 Cs+C++ +Tp+WR gpdg+ tLCnaCG++y+ + Pavir.8KG084800.1.p 355 CSHCHSPDTPQWRAGPDGPGTLCNACGIRYAAN 387 ******************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.596 | 349 | 387 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.8E-16 | 349 | 403 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.42E-14 | 351 | 412 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.4E-14 | 353 | 389 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.03E-15 | 354 | 410 | No hit | No description |
Pfam | PF00320 | 1.8E-15 | 355 | 388 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 355 | 380 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MRTQSHLSLR DVPEDLPDCD GGCFRPGGGL CCPDDPLDLV LHFFSTPSPR EASLEALGIR 60 GSPRRQEEQP PPPPPLLGWD QESGLGGVRL LGGGGCGEPE SGRAPEDAEP VDVDKYLVTV 120 PPDGGGGAEA TVRNNPARDT PGGIPAAVPA AGGVRACGAL GGVVSNGAPP LLPPVSAGAL 180 HHQYTFDGGV ASDVAPPLLA LMPAGGGVGF ASDVAPPVPA GALHACHALV AGAGSNDAPP 240 SWALAPPPAW ALPASRASSG CLTPATSETS SPAPVWRPLA WPVPRKRRRP PVERRKRPWS 300 LEFPLHALQA APPDNPGDSN GDEDAKNSCD NAGGGGIRRR RPVPRQRNRQ AQRVCSHCHS 360 PDTPQWRAGP DGPGTLCNAC GIRYAANKLL PEYRPSTAPS FRSDQHSNRH RKVVKLREQK 420 AKETQAMPDP VTRPPPKSDE FMDVCTYIST G* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 283 | 289 | PRKRRRP |
2 | 284 | 288 | RKRRR |
3 | 284 | 297 | RKRRRPPVERRKRP |
4 | 285 | 296 | KRRRPPVERRKR |
5 | 338 | 345 | RRRPVPRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG084800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243216 | 0.0 | AC243216.1 Panicum virgatum clone PV_ABa003-D10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2T7CKY5 | 0.0 | A0A2T7CKY5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Hb01505.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16076 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60530.1 | 3e-26 | GATA transcription factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG084800.1.p |