PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG079400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 403aa MW: 41215.4 Da PI: 9.1192

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG079400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	137.1	1.5e-42	108	242	2	116
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 a++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++++++ a+s +s as++s + a Pavir.8KG079400.1.p 108 APAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPSNFSsLAVSLRSGASHPSRA-A 196 899******************************************************************9997888888888876666.6 PP TCP 91 aksaakskksqksaasalnlakesr....................a 116 a++++ +++++ a++l ++ ++ a Pavir.8KG079400.1.p 197 AAFHHGLPPPHHEVAAMLGWNHGHHhqqqflppppqqqqapqdpgA 242 6666677777777787888887444244455554444444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.5E-36	114	224	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.349	114	168	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MDAPSSSTST STNSSRSASE QHQHQQHRAA GQPHQHHHPF YYTAAPGGGA AAAAAAANAA 60 GMPQFMGSLA IVQAPATGAG AGEVQLAHAA PESGSSGGGA EKKAVAPAPA KRPTKDRHTK 120 VEGRGRRIRM PALCAARVFQ LTRELGHKTD GETIEWLLQQ AEPAIVAATG TGTIPSNFSS 180 LAVSLRSGAS HPSRAAAAFH HGLPPPHHEV AAMLGWNHGH HHQQQFLPPP PQQQQAPQDP 240 GAGEFMRKRY RDGADDLFKD AAAAARQNPD DGGGGEGEEH KARVAPPAGA MWAVAPPPNS 300 SAAGGAFWMQ PAWAFGAGAG ASMVQAPLQF MSTRSSNNNN FPGGGATMDA NIGMLAALNA 360 SGGVQQQQQQ EQEGQPPEMA QRHRTGAGAN GGGAGRGAAS PQ*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MDAPSSSTST STNSSRSASE QHQHQQHRAA GQPHQHHHPF YYTAAPGGGA AAAAAAANAA  60
GMPQFMGSLA IVQAPATGAG AGEVQLAHAA PESGSSGGGA EKKAVAPAPA KRPTKDRHTK  120
VEGRGRRIRM PALCAARVFQ LTRELGHKTD GETIEWLLQQ AEPAIVAATG TGTIPSNFSS  180
LAVSLRSGAS HPSRAAAAFH HGLPPPHHEV AAMLGWNHGH HHQQQFLPPP PQQQQAPQDP  240
GAGEFMRKRY RDGADDLFKD AAAAARQNPD DGGGGEGEEH KARVAPPAGA MWAVAPPPNS  300
SAAGGAFWMQ PAWAFGAGAG ASMVQAPLQF MSTRSSNNNN FPGGGATMDA NIGMLAALNA  360
SGGVQQQQQQ EQEGQPPEMA QRHRTGAGAN GGGAGRGAAS PQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.20560	0.0	stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG079400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827969.1	1e-163	transcription factor PCF3-like
Swissprot	Q53PH2	8e-92	PCF3_ORYSJ; Transcription factor PCF3
TrEMBL	A0A3L6Q3C2	1e-163	A0A3L6Q3C2_PANMI; Uncharacterized protein
STRING	Pavir.J05134.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-42	TCP family protein

Link Out ? help Back to Top
Phytozome	Pavir.8KG079400.1.p