PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG072100.7.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TALE

Protein Properties

Length: 674aa MW: 69513 Da PI: 6.6241

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG072100.7.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.9	2e-09	368	405	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Pavir.8KG072100.7.p 368 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 405 664459******************************88 PP
2	BELL	115.9	2e-37	229	300	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk+kL+++l+eV++rY+qy+ q+q+v ssFea+ag gsa+ Yt+lAl++iSr+FrcL+dai+ q+ Pavir.8KG072100.7.p 229 ERQELQMKKSKLINMLDEVEQRYRQYHGQMQAVSSSFEAAAGAGSARTYTALALRTISRQFRCLRDAIVAQV 300 79*******************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.5E-58	152	298	IPR006563	POX domain
Pfam	PF07526	5.7E-49	157	297	IPR006563	POX domain
PROSITE profile	PS50071	11.969	346	409	IPR001356	Homeobox domain
CDD	cd00086	3.68E-13	349	410	No hit	No description
SMART	SM00389	1.2E-9	349	413	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.94E-17	351	416	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.8E-29	352	415	IPR009057	Homeodomain-like
Pfam	PF05920	2.6E-18	366	405	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence Send to blast
MAAYYHGGAG TDIQAGADGL QTLYLMNPGY ASYGDAGASP PGATNMMLLN SAVSTMTPAS 60 FGHHHQQSPS AAQQHFVGIP LQAAPSGYNL WTPATSGAAA DMSPPQAQTP GAAGVSAVLS 120 LSSREAPPPV TVAAVGGAGD EGKYHQLGAS ATPQGQMVMS SKYLKAAQEL LDEVVSVSKG 180 VEDAKAAATA KSLAAVKKKE DSEGVSGSGT DDGGGAKSGG AVPELSTAER QELQMKKSKL 240 INMLDEVEQR YRQYHGQMQA VSSSFEAAAG AGSARTYTAL ALRTISRQFR CLRDAIVAQV 300 RAASRALGED ADAAVAGGRT VGSRLRYIDH QLRQQRALQQ LGMMQGGAWR PQRGLPERSV 360 SILRAWLFEH FLHPYPKDSD KIMLAKQTGL TRSQVSNWFI NARVRLWKPM VEEMYLEETK 420 YQDGGGGGND EGKSGGGAKS ADTNNGVDSV TPRADGAMSK AAAARAAGGA AAGAPSAKGG 480 VGGVHGSTML ELAGDQQAAA HAGFYEGEDD DDDDVERRLK KARGDEPPPG AFHVHDMAAL 540 HAQAAAAARQ QHEEVSHREL LMKFMESGGG AGARDHHHHH QDGGGGGYSL FAPGPYGQFS 600 SEPFAFAGNG GVSLTLGLPH GAGGGGAEQT ASFLMGSSAA GDSGSNGGAA GGYDMNMQST 660 KSFAAQLMRD FVA*

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence Send to blast

MAAYYHGGAG TDIQAGADGL QTLYLMNPGY ASYGDAGASP PGATNMMLLN SAVSTMTPAS  60
FGHHHQQSPS AAQQHFVGIP LQAAPSGYNL WTPATSGAAA DMSPPQAQTP GAAGVSAVLS  120
LSSREAPPPV TVAAVGGAGD EGKYHQLGAS ATPQGQMVMS SKYLKAAQEL LDEVVSVSKG  180
VEDAKAAATA KSLAAVKKKE DSEGVSGSGT DDGGGAKSGG AVPELSTAER QELQMKKSKL  240
INMLDEVEQR YRQYHGQMQA VSSSFEAAAG AGSARTYTAL ALRTISRQFR CLRDAIVAQV  300
RAASRALGED ADAAVAGGRT VGSRLRYIDH QLRQQRALQQ LGMMQGGAWR PQRGLPERSV  360
SILRAWLFEH FLHPYPKDSD KIMLAKQTGL TRSQVSNWFI NARVRLWKPM VEEMYLEETK  420
YQDGGGGGND EGKSGGGAKS ADTNNGVDSV TPRADGAMSK AAAARAAGGA AAGAPSAKGG  480
VGGVHGSTML ELAGDQQAAA HAGFYEGEDD DDDDVERRLK KARGDEPPPG AFHVHDMAAL  540
HAQAAAAARQ QHEEVSHREL LMKFMESGGG AGARDHHHHH QDGGGGGYSL FAPGPYGQFS  600
SEPFAFAGNG GVSLTLGLPH GAGGGGAEQT ASFLMGSSAA GDSGSNGGAA GGYDMNMQST  660
KSFAAQLMRD FVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	3e-17	355	413	5	63	Homeobox protein Meis2
4xrm_B	3e-17	355	413	5	63	Homeobox protein Meis2
5bng_A	2e-17	355	413	1	59	Homeobox protein Meis2
5bng_B	2e-17	355	413	1	59	Homeobox protein Meis2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.17078	0.0	leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG072100.7.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT086092	0.0	BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827941.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_025827942.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_025827943.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_025827944.1	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-108	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A2S3ICH1	0.0	A0A2S3ICH1_9POAL; Uncharacterized protein
STRING	Pavir.Hb01912.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	6e-78	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	Pavir.8KG072100.7.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]