PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG072100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TALE | ||||||||
Protein Properties | Length: 674aa MW: 69513 Da PI: 6.6241 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 2e-09 | 368 | 405 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Pavir.8KG072100.2.p 368 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 405 664459******************************88 PP | |||||||
2 | BELL | 115.9 | 2e-37 | 229 | 300 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk+kL+++l+eV++rY+qy+ q+q+v ssFea+ag gsa+ Yt+lAl++iSr+FrcL+dai+ q+ Pavir.8KG072100.2.p 229 ERQELQMKKSKLINMLDEVEQRYRQYHGQMQAVSSSFEAAAGAGSARTYTALALRTISRQFRCLRDAIVAQV 300 79*******************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.5E-58 | 152 | 298 | IPR006563 | POX domain |
Pfam | PF07526 | 5.7E-49 | 157 | 297 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.969 | 346 | 409 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.68E-13 | 349 | 410 | No hit | No description |
SMART | SM00389 | 1.2E-9 | 349 | 413 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.94E-17 | 351 | 416 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.8E-29 | 352 | 415 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.6E-18 | 366 | 405 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
MAAYYHGGAG TDIQAGADGL QTLYLMNPGY ASYGDAGASP PGATNMMLLN SAVSTMTPAS 60 FGHHHQQSPS AAQQHFVGIP LQAAPSGYNL WTPATSGAAA DMSPPQAQTP GAAGVSAVLS 120 LSSREAPPPV TVAAVGGAGD EGKYHQLGAS ATPQGQMVMS SKYLKAAQEL LDEVVSVSKG 180 VEDAKAAATA KSLAAVKKKE DSEGVSGSGT DDGGGAKSGG AVPELSTAER QELQMKKSKL 240 INMLDEVEQR YRQYHGQMQA VSSSFEAAAG AGSARTYTAL ALRTISRQFR CLRDAIVAQV 300 RAASRALGED ADAAVAGGRT VGSRLRYIDH QLRQQRALQQ LGMMQGGAWR PQRGLPERSV 360 SILRAWLFEH FLHPYPKDSD KIMLAKQTGL TRSQVSNWFI NARVRLWKPM VEEMYLEETK 420 YQDGGGGGND EGKSGGGAKS ADTNNGVDSV TPRADGAMSK AAAARAAGGA AAGAPSAKGG 480 VGGVHGSTML ELAGDQQAAA HAGFYEGEDD DDDDVERRLK KARGDEPPPG AFHVHDMAAL 540 HAQAAAAARQ QHEEVSHREL LMKFMESGGG AGARDHHHHH QDGGGGGYSL FAPGPYGQFS 600 SEPFAFAGNG GVSLTLGLPH GAGGGGAEQT ASFLMGSSAA GDSGSNGGAA GGYDMNMQST 660 KSFAAQLMRD FVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 3e-17 | 355 | 413 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 3e-17 | 355 | 413 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 2e-17 | 355 | 413 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 2e-17 | 355 | 413 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.17078 | 0.0 | leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG072100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086092 | 0.0 | BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827941.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_025827942.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_025827943.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_025827944.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-108 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A2S3ICH1 | 0.0 | A0A2S3ICH1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Hb01912.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 6e-78 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG072100.2.p |
Publications ? help Back to Top | |||
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