PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG023400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 300aa    MW: 32762.3 Da    PI: 10.5872
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG023400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.88e-2296159359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE....EEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv....veitYegeHnhe 59 
                          Dgy+WrKYGqK+++g+ ++rsYYrCt +   gCp+k+ v+r++  + +     +++Y geH+++
  Pavir.8KG023400.1.p  96 DGYQWRKYGQKQIEGAIYARSYYRCTRSaeqGCPAKRTVQRNDGGGGAaapkYTVVYMGEHTCT 159
                          9*************************988889**********97765412226899*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-2288159IPR003657WRKY domain
SuperFamilySSF1182901.57E-2090159IPR003657WRKY domain
SMARTSM007741.1E-2694160IPR003657WRKY domain
PROSITE profilePS5081117.54696137IPR003657WRKY domain
PfamPF031068.5E-2396158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MMISRRPAAA LKAEQQPPAP SSSCCDGRRR RPRGSKRGRP QDDDSKSYNG GEQHLEPPRH  60
KSCKTSRKQQ NKQRRQKMSG GGGGTSSLVT SVPDFDGYQW RKYGQKQIEG AIYARSYYRC  120
TRSAEQGCPA KRTVQRNDGG GGAAAPKYTV VYMGEHTCTP NDDSMEAPPV ILETTAVVPA  180
VIKSTNNRRT PQDHHHDDTV PLLLLVSPQH HHQAALIVLA APAPITPLPP GLMSLRRSRT  240
TSPTGAGCSA SMTAGPQQRL LRCRRWKKII SPDQSGHRCT SPQRMLVGRL MTITCCCSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG023400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586328e-93KU058632.1 UNVERIFIED: Panicum miliaceum WRKY30-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808247.19e-55probable WRKY transcription factor 65 isoform X2
TrEMBLA0A2T7E4K42e-55A0A2T7E4K4_9POAL; Uncharacterized protein
STRINGPavir.Ca00085.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-15WRKY DNA-binding protein 70