PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG431600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 20094.7 Da PI: 10.5157 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.5e-19 | 13 | 63 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrdp + r+r++lg+f++ae Aa+a++ a++ l+g Pavir.7NG431600.1.p 13 PRYRGVRKRP-WGRFAAEIRDPAK---RARVWLGTFDSAEAAARAYDVAARTLRG 63 68********.**********843...6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-13 | 13 | 63 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.61E-20 | 13 | 71 | No hit | No description |
SuperFamily | SSF54171 | 5.04E-22 | 14 | 72 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.4E-36 | 14 | 77 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.999 | 14 | 71 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-31 | 14 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MMRDTAAVAV AAPRYRGVRK RPWGRFAAEI RDPAKRARVW LGTFDSAEAA ARAYDVAART 60 LRGPLARTNF PCASSRLPLP SRHQGGCGGG LVAPPPAAPT CSSSSTVESS SGPRGAPRAA 120 AAAAPRIRRR SVKKPRPAAP DTDCHSDCAS SASVVDDGDD ASTVRSRAPF DLNVPAPVDG 180 DHALDLCTEL RL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 7 | 71 | 7 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00366 | DAP | Transfer from AT3G20310 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG431600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU958014 | 3e-94 | EU958014.1 Zea mays clone 1640422 ethylene-responsive transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822790.1 | 3e-73 | ethylene-responsive transcription factor 7-like | ||||
Swissprot | Q9LDE4 | 9e-30 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | A0A3L6Q6G3 | 3e-85 | A0A3L6Q6G3_PANMI; Ethylene-responsive transcription factor 7-like | ||||
STRING | Pavir.Gb00092.1.p | 1e-130 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5123 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 9e-24 | ethylene response factor 7 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG431600.1.p |
Publications ? help Back to Top | |||
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