PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG319200.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 222aa    MW: 24503.9 Da    PI: 8.6402
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG319200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like301.1e-091203655
              G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                         m++kgLtl+h+kSHLQkYRl
  Pavir.7NG319200.2.p  1 MGMKGLTLYHLKSHLQKYRL 20
                         899****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-8121IPR009057Homeodomain-like
PfamPF143794.6E-2264109IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGMKGLTLYH LKSHLQKYRL GRQGKKSTGL ELANGSGVAA QGLSFPHPTH VPGVPGEGKN  60
TGEMPLAEAL KYQIQVQRKL QEQLEVQKKL QMRIEAQGKY LKAILEKAKG NISFDVNAPI  120
DNIESTRSQL MDFNLALSGF MDNATQVCEE SNGQLVKAIS DDSHKDKLGF QLYQLGSQEA  180
KEDKWTPKTE DSLRLDLNIK GGYDLSSRGM QACELDLKIN Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.442400.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG319200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824515.11e-142myb family transcription factor PHL11-like
TrEMBLA0A2T7CZJ21e-143A0A2T7CZJ2_9POAL; Uncharacterized protein
STRINGPavir.Gb00791.1.p1e-160(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.11e-25G2-like family protein