PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG319200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 275aa MW: 30225.5 Da PI: 8.9622

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG319200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.3	3.5e-33	19	73	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLH+rFv+av++LGG+e+AtPk++l+lm++kgLtl+h+kSHLQkYRl Pavir.7NG319200.1.p 19 KPRLRWTPELHQRFVDAVDKLGGPEEATPKSVLRLMGMKGLTLYHLKSHLQKYRL 73 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.571	16	76	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-32	16	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-16	19	74	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-24	19	74	IPR006447	Myb domain, plants
Pfam	PF00249	3.2E-10	21	72	IPR001005	SANT/Myb domain
Pfam	PF14379	6.5E-22	117	162	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MMEGSYGGGG GGAMSRDPKP RLRWTPELHQ RFVDAVDKLG GPEEATPKSV LRLMGMKGLT 60 LYHLKSHLQK YRLGRQGKKS TGLELANGSG VAAQGLSFPH PTHVPGVPGE GKNTGEMPLA 120 EALKYQIQVQ RKLQEQLEVQ KKLQMRIEAQ GKYLKAILEK AKGNISFDVN APIDNIESTR 180 SQLMDFNLAL SGFMDNATQV CEESNGQLVK AISDDSHKDK LGFQLYQLGS QEAKEDKWTP 240 KTEDSLRLDL NIKGGYDLSS RGMQACELDL KINQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-21	19	75	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-21	19	75	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-21	19	75	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-21	19	75	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.44240	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG319200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824515.1	1e-174	myb family transcription factor PHL11-like
TrEMBL	A0A3L6Q6Y4	1e-177	A0A3L6Q6Y4_PANMI; Myb family transcription factor APL-like
STRING	Pavir.Gb00791.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	8e-52	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pavir.7NG319200.1.p