PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG267900.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 177aa    MW: 18786.4 Da    PI: 9.2485
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG267900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.53.4e-10152172121
                          ---SS-EEEEEEE--TT-SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                          ldDgy+WrKYGqK+vk+s +p
  Pavir.7NG267900.3.p 152 LDDGYKWRKYGQKVVKNSLHP 172
                          59****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-12137172IPR003657WRKY domain
SuperFamilySSF1182903.79E-9144173IPR003657WRKY domain
PROSITE profilePS5081111.968147172IPR003657WRKY domain
PfamPF031061.6E-6153172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEGSSQFETC LPSLFSPCAP SPPLAPLPNQ HKLLQMPLFQ EQGGNHGVML SSYHQGGLYP  60
LLLPGIPFCN SSAGAGEKPT GFVVLDAGEA GTSAAKAAGE IASTAAAATF HGSSSWWKGS  120
AAAAGEKARM KVRRKMREPR FCFQTRSDVD VLDDGYKWRK YGQKVVKNSL HPSFSV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127135ARMKVRRKM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.120288e-49callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG267900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0679822e-64BT067982.1 Zea mays full-length cDNA clone ZM_BFb0009G22 mRNA, complete cds.
GenBankEU9728052e-64EU972805.1 Zea mays clone 388369 WRKY36 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
GenBankKJ7283122e-64KJ728312.1 Zea mays clone pUT6592 WRKY transcription factor (WRKY101) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825009.11e-102probable WRKY transcription factor 12
TrEMBLA0A2S3I9431e-101A0A2S3I943_9POAL; Uncharacterized protein
STRINGPavir.Gb01200.1.p1e-125(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.16e-25WRKY family protein