PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG265000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 747aa    MW: 80358.1 Da    PI: 6.0763
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG265000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.91.8e-3094178187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+++e++aLi++r+em+ ++r++ lk+plWe+vs+k+++ g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++fd+lea
  Pavir.7NG265000.2.p  94 RWPREETQALIRIRSEMDATFRDATLKGPLWEDVSRKLADLGYTRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFDELEA 178
                          8*********************************************************************866665..******985 PP
2trihelix108.15.9e-34489574187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k ev+aLi++r +++ r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+qlea
  Pavir.7NG265000.2.p 489 RWPKTEVHALIQLRVDLDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQLEA 574
                          8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.56187151IPR017877Myb-like domain
SMARTSM007178.0E-591153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-492151IPR009057Homeodomain-like
CDDcd122031.16E-2893158No hitNo description
PfamPF138378.2E-2293179No hitNo description
SMARTSM007170.0021486548IPR001005SANT/Myb domain
PfamPF138371.6E-23488575No hitNo description
PROSITE profilePS500907.236488546IPR017877Myb-like domain
CDDcd122038.53E-30489553No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MQQQHQDGGG SQYGVAPPDM GPFSPPAASG PMLLSSRPPS APQPQPQPQP QPRASYEELA  60
AVSSVAGAGA GGVFDDEILG GGGGDGSSGA SSNRWPREET QALIRIRSEM DATFRDATLK  120
GPLWEDVSRK LADLGYTRSA KKCKEKFENV HKYYKRTKEG RAGRQDGKSY RFFDELEALH  180
AAALQSQQQQ QPPQHQLPQA STAPPLHAFA APVSAPQPMS SMPPPPMQPA PISSTAPAPA  240
PTPASMEMPS AAHQPLNLPG FSFSSMSDSE SDDESEDDDM TAETGGSQDR LGKRKRGDGG  300
GSSSSKKMMS FFEGLMQQVV ERQEEMQRRF LETMEKREVE RSSREEAWRR QEVARLNREQ  360
EQLAHERAAA ASRDAAIIAF IKRIGGPSVQ PPPAVVVPMS VQTPPPPKQP PRQQHPPPPS  420
PQATTPQSKP ISAAPLQQQP KETSHRDAAG TPRSAPPTSG ASLELVPVAE QHVDSGLGGG  480
DGGAASSSRW PKTEVHALIQ LRVDLDMRYQ ETGPKGPLWE EISSGMRRLG YNRSSKRCKE  540
KWENINKYYK KVKESNKKRP EDSKTCPYFH QLEAIYSRKH LRSIAAAAAS NVAIAASAPP  600
ALPEQPNPSQ LEIEGKNIND DKRNSGGSGG AAPQVPASNG DKAPTTPAAF DADSGLKKPE  660
DTVRELNEHP PREFTTDETD SDDMGDEYTD DGEEGEDDGK MQYRIQFQRP TNPGGTNSAP  720
APATTPAAAP VVPTSAPAST FLAMVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG265000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550330.0BT055033.1 Zea mays full-length cDNA clone ZM_BFc0059A16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825673.10.0trihelix transcription factor GTL1-like isoform X1
RefseqXP_025825674.10.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A3L6PWB50.0A0A3L6PWB5_PANMI; Uncharacterized protein
STRINGPavir.Gb01188.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.15e-39GT-2-like 1