PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG238500.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 708aa    MW: 75367.3 Da    PI: 7.6306
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG238500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.6e-31285342260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +Dgy+WrKYGqK+vk se+prsY++Ct+++C+vkkkvers+ +++++ei+Y+g+Hnh+k
  Pavir.7NG238500.2.p 285 EDGYSWRKYGQKQVKHSEYPRSYFKCTHPNCQVKKKVERSH-EGHITEIIYKGTHNHPK 342
                          8****************************************.***************85 PP
2WRKY105.33.2e-33496554159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+++d k v++tYeg+Hnhe
  Pavir.7NG238500.2.p 496 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCLVRKHVERASHDLKSVITTYEGKHNHE 554
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182904.05E-25278343IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-27278343IPR003657WRKY domain
PROSITE profilePS5081121.918279343IPR003657WRKY domain
SMARTSM007744.0E-34284342IPR003657WRKY domain
PfamPF031061.1E-23285341IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.8E-37481556IPR003657WRKY domain
SuperFamilySSF1182905.49E-29488556IPR003657WRKY domain
PROSITE profilePS5081137.7491556IPR003657WRKY domain
SMARTSM007749.2E-39496555IPR003657WRKY domain
PfamPF031064.2E-25497554IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MEGHVGMQEG KDPDPGPLSL MRGFQTEAFL PDTEVANAGF EKDGLSVAIR SPQEEGPSLP  60
MTPQFGQKSS PGSTLAERMQ ARAGFRVPKL SMPSSTAVAA DNKVPGAPSP YLTIPPGLSP  120
ATLLDSPVFI SNAMGQASPT TGKLFMLGST NDNDPIRYGG PLLGDGPDSF SFKPLDLKSS  180
HYTAEGKKES LCNNQPPLPS THVSVKTETK IQTVQEANLL GQLNKQNNSG QTNMKSSSHD  240
PNSKLSRLAT AGAGNEDVSS LRSQPTEEGD TRGDYPAMAT TTPAEDGYSW RKYGQKQVKH  300
SEYPRSYFKC THPNCQVKKK VERSHEGHIT EIIYKGTHNH PKPAQSRRPG APPVHPFVEG  360
AQADTPDNPR SHTNTAEARQ AWHNNAVVKD LHGDGMDATS PPSVPGELCD SSASMQIHDA  420
GGVDVTSAAT AGSDEVDGED RVTRGSMSQG GADAEGDELE SKRRKLESYT IDMSTASRAV  480
REPRVVIQTT SEVDILDDGY RWRKYGQKVV KGNPNPRSYY KCTHPGCLVR KHVERASHDL  540
KSVITTYEGK HNHEVPAARN SGHPSTATGA AAARRPEHPS VHDGLMRHLG GCGALFGLAP  600
PPSRDPLAPM VNYPTYAAAG LGGGGIGPAS LPSLPMPGHP MGPVEGLKLP MLAPSPLHQH  660
PLLRHRQAMQ AAGLVPPKAD VKVEGSGAPP PSVYQLMRSG LPLGHQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-36285557878Probable WRKY transcription factor 4
2lex_A5e-36285557878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG238500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823122.10.0probable WRKY transcription factor 2
TrEMBLA0A3L6PRS40.0A0A3L6PRS4_PANMI; Putative WRKY transcription factor 34
STRINGPavir.Gb01477.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-121WRKY DNA-binding protein 2