PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG211100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 310aa MW: 33176.2 Da PI: 9.6684

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG211100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.4	6e-30	67	160	6	99
DUF260 6 kvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +++r++C+++C+lapyfpa++p +f+ vh++FG++n+l+ l+++p+ + ++ +++lv eA++r+ dPv+G+vg i +l+ ql +++el+ Pavir.7NG211100.1.p 67 RHKRQRCPPGCALAPYFPADDPDRFRSVHRVFGVRNLLRALREVPRPRWDACVRTLVHEARMRLADPVRGCVGAIEDLEAQLVDTAVELE 156 79**************************************************************************************99 PP DUF260 96 llke 99 +l++ Pavir.7NG211100.1.p 157 VLRR 160 8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.22	61	162	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.3E-29	67	159	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MSAPPAPPTW SPPSGGATGS ELEPDSPSSD GTSSPRAPPT GTSSIASSST PPATGPGSGG 60 GGSPPPRHKR QRCPPGCALA PYFPADDPDR FRSVHRVFGV RNLLRALREV PRPRWDACVR 120 TLVHEARMRL ADPVRGCVGA IEDLEAQLVD TAVELEVLRR RQEAYRQAKK RRGLRWFRPA 180 DPGEAAARQQ PGTGRTRGDS MIQPQDPYGP AWQPATAGLA ATQARLSPTQ PQVLSSWASA 240 TTGLTATQPQ LSAMLPPQLY ATQPQFLPMR PQPAMRRQPT PRATAMVHDG FGNAWANDDE 300 RGDPDPDDM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-20	55	156	2	105	LOB family transfactor Ramosa2.1
5ly0_B	5e-20	55	156	2	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG211100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002436474.1	2e-41	LOB domain-containing protein 22
TrEMBL	A0A2S3I6F3	6e-97	A0A2S3I6F3_9POAL; Uncharacterized protein
STRING	Pavir.J19063.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19681	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	6e-22	LOB domain-containing protein 11

Link Out ? help Back to Top
Phytozome	Pavir.7NG211100.1.p