PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG186100.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 301aa MW: 32093.5 Da PI: 9.59 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.2 | 5e-30 | 21 | 74 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt +LH++Fv+a+e LGG++kAtPk il++m+ k Lt++hvkSHLQ+YR Pavir.7NG186100.4.p 21 PRMRWTADLHRSFVRAIECLGGQDKATPKLILQFMGAKELTISHVKSHLQMYRA 74 9****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-28 | 17 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.87E-15 | 18 | 74 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.4E-23 | 21 | 74 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-6 | 22 | 73 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MGGGGGGKNG AVRQYIRSKE PRMRWTADLH RSFVRAIECL GGQDKATPKL ILQFMGAKEL 60 TISHVKSHLQ MYRAARLGAA RRGMQAAQLQ RRHSCAGNEQ GPKEFLCPPL KRARMGTAAV 120 YQILQGSHGI SEARTAAAGS LYCVDDYMQA MAMRRRIKEE GLRWQRRDVA AATAASNLQA 180 VGCLEQESDR FKQISRPEAN HLGLALNQQQ GSIEDGNGCS LFSSFSVAAK GEPPDQCSLS 240 LSVGLDPNSA RAMAAASPSG SSCILMASPA RRSSSDCSGH SDHFLGPGLS LELSLSICGS 300 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-16 | 22 | 76 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-16 | 22 | 76 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-16 | 22 | 76 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-16 | 22 | 76 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG186100.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU961920 | 2e-81 | EU961920.1 Zea mays clone 239042 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825828.1 | 0.0 | putative Myb family transcription factor At1g14600 isoform X1 | ||||
TrEMBL | A0A2T7CYR7 | 0.0 | A0A2T7CYR7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb01051.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 1e-25 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG186100.4.p |