PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG186100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 301aa    MW: 32093.5 Da    PI: 9.59
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG186100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.25e-302174255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         pr+rWt +LH++Fv+a+e LGG++kAtPk il++m+ k Lt++hvkSHLQ+YR 
  Pavir.7NG186100.1.p 21 PRMRWTADLHRSFVRAIECLGGQDKATPKLILQFMGAKELTISHVKSHLQMYRA 74
                         9****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-281775IPR009057Homeodomain-like
SuperFamilySSF466892.87E-151874IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-232174IPR006447Myb domain, plants
PfamPF002491.1E-62273IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGGGGGGKNG AVRQYIRSKE PRMRWTADLH RSFVRAIECL GGQDKATPKL ILQFMGAKEL  60
TISHVKSHLQ MYRAARLGAA RRGMQAAQLQ RRHSCAGNEQ GPKEFLCPPL KRARMGTAAV  120
YQILQGSHGI SEARTAAAGS LYCVDDYMQA MAMRRRIKEE GLRWQRRDVA AATAASNLQA  180
VGCLEQESDR FKQISRPEAN HLGLALNQQQ GSIEDGNGCS LFSSFSVAAK GEPPDQCSLS  240
LSVGLDPNSA RAMAAASPSG SSCILMASPA RRSSSDCSGH SDHFLGPGLS LELSLSICGS  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-162276357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-162276357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-162276357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-162276357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG186100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9619202e-81EU961920.1 Zea mays clone 239042 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825828.10.0putative Myb family transcription factor At1g14600 isoform X1
TrEMBLA0A2T7CYR70.0A0A2T7CYR7_9POAL; Uncharacterized protein
STRINGPavir.Gb01051.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29663583
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.11e-25G2-like family protein