PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG091300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 357aa    MW: 38494.4 Da    PI: 5.7508
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG091300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48e-112823221055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          rrRR+riN+++  L++l+P+      +K++ +++Le+Av+Y++ Lq
  Pavir.7NG091300.1.p 282 RRRRERINERLKILQKLVPNG-----TKVDISTMLEEAVHYVRFLQ 322
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.193272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-15274338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-14277335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-13278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-8282322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.39E-4288326No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSQAELTAWL ESRDAHWCSQ YPAAPAPDEE SEIVAQFLAA PYPYPYPNDD DDEQEQEQKH  60
QHHDKLGEIS ATSSTYWPDP GNGACYWPSN GDASNSNSSG SGAYFDGSGC CYYYLAEPDV  120
SLGINTRTTT LPCTSAIDLN LLGDGEEEGT TGVVHPVPPN PSSPADHTGT EQPLIPTHTA  180
GHRSGGDDGA AARAAVSIPK RKAQAGHDGG DLGRHKKEKK AASKTAQKFI QESSQSKGSC  240
SADESMSNCS EVSRRSGVHG GGKAKARAAK GSATDPQSLY ARRRRERINE RLKILQKLVP  300
NGTKVDISTM LEEAVHYVRF LQQQIKMLSS DEMWMYAPIA YNGMSLGIDF KISTLQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG091300.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796889.10.0transcription factor bHLH85-like
TrEMBLA0A2S3IHT20.0A0A2S3IHT2_9POAL; Uncharacterized protein
STRINGPavir.J00626.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144452123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-36bHLH family protein