PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG079300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 254aa MW: 28902.8 Da PI: 5.4551 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 33.8 | 7.3e-11 | 79 | 127 | 3 | 53 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 l W p L ++F+ a+e LG e AtP +i+ +m+v+++ ++++ HLQk+ Pavir.7NG079300.1.p 79 HLMWIPFLQKKFLYALELLG--EAATPGKIKLIMNVNSIGRKQISAHLQKH 127 689****************4..67*************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-9 | 75 | 131 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.24E-5 | 78 | 133 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.0E-11 | 80 | 128 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MMSVDLTWST MKRSVELGAR FLVKKPLDGN TINNIWQHLD LKFYWWEKIE YLFQGIEAKT 60 DDVFESENKF IEGKKKVAHL MWIPFLQKKF LYALELLGEA ATPGKIKLIM NVNSIGRKQI 120 SAHLQKHLKK VEKELRNTDA KKCKNDPEIH PTNISDEEMS WDETAGNTQE TQGKTMYEAM 180 RGALQLGTVF DESQLPNDPF GRQARKGEVD ITGDGYGRDD WTCDSYKPVA NGDAQAQVVK 240 LVTYSDSEDG EAF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG079300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825246.1 | 1e-160 | two-component response regulator ORR29-like | ||||
TrEMBL | A0A2T8IBS7 | 1e-159 | A0A2T8IBS7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga02356.1.p | 1e-168 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5920 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44190.1 | 6e-08 | GOLDEN2-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG079300.1.p |