PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG077300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 552aa    MW: 61492.9 Da    PI: 10.3153
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG077300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.43.8e-11521123599
                          EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          t  l ++ g++W+v++   + +++ +l++GW +F  a+g+ +g fv++++ g  ++ l++k+f++
  Pavir.7NG077300.1.p  52 TALLFSPFGKVWRVEV--GRDGDGAFLGRGWADFLAAHGVGVGWFVLLRHAG--RGALTFKAFDT 112
                          66777899********..999999*************************876..55569999986 PP
2B3421.7e-131502301497
                          T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                            +++p +f++++  ++  +s+t ++ ++ g+ W+++l  +++++++++++GW++F + +g+  gD+++++++g++ f  +vk+f
  Pavir.7NG077300.1.p 150 EKMIIPARFVKQYvTEEYLNSRTAVVFSPLGKFWQIEL--ENSPSGMFFAGGWSQFLDFHGISKGDILLLRYEGNMVF--KVKAF 230
                          459**********8444458899***************..**********************************9999..77766 PP
3B348.81.3e-153133861186
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          l +++l l+ kf++ +g+++++++tl+ e  s r W+v    + k  +++l++GWk+F+++n+Lk+gD ++F   +
  Pavir.7NG077300.1.p 313 L-ECLLPLSIKFCRGIGLQNTCTITLKTEIDSTRLWQVHGA-TYKTYGCILGDGWKSFCQENRLKTGDLCTFNIRE 386
                          4.47899************99988888888999*******3.33334599**********************9433 PP
4B360.52.8e-19459540386
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          +++++ ++ +++ l+lp++f++++g++k +++tl+    s+rsW+v+  +  +s ++ +++GW +F+++n+Lk+gD+++F +++
  Pavir.7NG077300.1.p 459 QKEMNYNSIARH-LCLPRRFCSRIGLQKCCTITLKTSANSSRSWQVRGLMYSNS-SFHIGSGWIKFCRENRLKVGDICTFNVIK 540
                          566677777777.**************99988888888999*******554444.4789*********************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.001616113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-1027114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-1150115IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-852112IPR003340B3 DNA binding domain
PROSITE profilePS508639.37555113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-17136233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-18137238IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.407137233IPR003340B3 DNA binding domain
SMARTSM010194.3E-10140233IPR003340B3 DNA binding domain
PfamPF023626.8E-11150229IPR003340B3 DNA binding domain
CDDcd100178.81E-13151230No hitNo description
SMARTSM010190.0029304398IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-14308396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-14309396IPR015300DNA-binding pseudobarrel domain
CDDcd100172.83E-8314396No hitNo description
PfamPF023627.6E-12315390IPR003340B3 DNA binding domain
PROSITE profilePS5086310.969334398IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-18452550IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-18455550IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.534456551IPR003340B3 DNA binding domain
SMARTSM010197.1E-5458551IPR003340B3 DNA binding domain
CDDcd100178.98E-13459536No hitNo description
PfamPF023621.2E-15464547IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MTSSRSAAGA RAAAKQLKAL MPPSFHKLRI SDELAGCFDD GGGGGGGAPG PTALLFSPFG  60
KVWRVEVGRD GDGAFLGRGW ADFLAAHGVG VGWFVLLRHA GRGALTFKAF DTSFCVKEFA  120
ASAAVMASRS SKGVSCKPQF IRIVYPNLTE KMIIPARFVK QYVTEEYLNS RTAVVFSPLG  180
KFWQIELENS PSGMFFAGGW SQFLDFHGIS KGDILLLRYE GNMVFKVKAF GLNGHQKDFK  240
NQDAGILQNI EMQQELLSPI RKRKTIDEKS SSAKNKRPKS SETYLNTKLP LKKPDYHIGA  300
SSWIRKEINT YALECLLPLS IKFCRGIGLQ NTCTITLKTE IDSTRLWQVH GATYKTYGCI  360
LGDGWKSFCQ ENRLKTGDLC TFNIRETMLW HVTIKRSPTS ADTKKQKESP CSSNKEHETK  420
KVNSSSEERV MPKGSTNSLS KASKCPRSVY EIGPPSWVQK EMNYNSIARH LCLPRRFCSR  480
IGLQKCCTIT LKTSANSSRS WQVRGLMYSN SSFHIGSGWI KFCRENRLKV GDICTFNVIK  540
TTLWHVVITR R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG077300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825231.10.0putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS741e-108Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLA0A1E5W9E30.0A0A1E5W9E3_9POAL; Putative B3 domain-containing protein
STRINGPavir.Gb02310.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.19e-15B3 family protein