PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG076700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 352aa    MW: 40076.9 Da    PI: 8.423
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG076700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.13.2e-18120202187
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          ++k+ ++  +l+++ l lp  f++++g+ k++  ++t++++   sW v+ i ++k ++y+l  GW++F+++n++kegD+++F ++++
  Pavir.7NG076700.1.p 120 WIKKQINTETLENH-LALPIAFCDAIGLHKPS--MITFKTTMTGSWWVRGIPCNK-QSYLLVHGWRRFCEENNVKEGDICTFNVIKT 202
                          67888999999999.************99655..8***************65554.68*************************8764 PP
2B352.58.9e-172703431085
                          HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          +++++ ++lp +f++++g+++++++tl+   +s rsW+v +    ++    l++GWk+F+ +n++kegD+++F  +
  Pavir.7NG076700.1.p 270 NTNNRYFTLPPTFCNAIGLSEACTITLKTSLSSTRSWQVHV--LPYKHVSNLGSGWKRFCWDNDIKEGDTCTFNIV 343
                          5567789**************9988888777899*******..88888888**********************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.952145IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-6447IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-7447IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-20116212IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-20117213IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.533119213IPR003340B3 DNA binding domain
SMARTSM010193.6E-9121213IPR003340B3 DNA binding domain
PfamPF023628.3E-14122207IPR003340B3 DNA binding domain
CDDcd100172.51E-9131204No hitNo description
PROSITE profilePS5086311.773261351IPR003340B3 DNA binding domain
SMARTSM010190.0068264351IPR003340B3 DNA binding domain
CDDcd100171.38E-8266340No hitNo description
SuperFamilySSF1019366.28E-16267350IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-13270344IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-16272350IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDQSDVFFAG GWPQFLAFHG ITESNALMLR YEGNMVFTVK VFEPDGCQRK SKHKDNIMQQ  60
SEQEINLEKQ QEALSIPIWK CKNENDLPCS EVHKLKGFLP SPNEASLQKN SFYEIGQPSW  120
IKKQINTETL ENHLALPIAF CDAIGLHKPS MITFKTTMTG SWWVRGIPCN KQSYLLVHGW  180
RRFCEENNVK EGDICTFNVI KTTMWHVVIT RSDITKLPET PFASSTKCKS IDDRPISQGQ  240
EMSKGSKASS QKRIPYEIGP PAWIKKKILN TNNRYFTLPP TFCNAIGLSE ACTITLKTSL  300
SSTRSWQVHV LPYKHVSNLG SGWKRFCWDN DIKEGDTCTF NIVETTLWHV S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG076700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826333.11e-121putative B3 domain-containing protein Os04g0346900
TrEMBLA0A3L6PY540.0A0A3L6PY54_PANMI; Uncharacterized protein
STRINGPavir.J14487.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.13e-13B3 family protein