PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG076000.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 387aa    MW: 44203 Da    PI: 10.107
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG076000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.24.5e-114831698
                         EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3 16 lvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                         + +p kf+++h   +  ++++ + ++  ++g+++++kl  + +++ +++t+GW++F   +++ e   ++ +++g++ f  +vkvf 
  Pavir.7NG076000.3.p  4 MPIPAKFLQQHipkE--HQNNCMAIVLGPHGKVYNIKL--ETYRSDMFFTGGWSQFMVFHDITESNALLVRYEGNMVF--TVKVFG 83
                         779********9643..445668999************..999999********************************..898886 PP
2B360.62.8e-19142226186
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          ++k+ ++ ++l+++ l l k f++++g++k++++tl+    +g +sW v    +k+s +y+l +GW++F+++n+LkegD+++F +++
  Pavir.7NG076000.3.p 142 WIKKQINTNTLEKH-LALAKAFCDAIGLQKPCTITLRTSRADGtKSWLVHGLTCKTS-SYLLVQGWRQFCQENHLKEGDTCTFNVIE 226
                          67888999999999.**************999777776666669*******666665.79***********************9765 PP
3B348.81.3e-15288370186
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          ++k+++++++ +++ l lp +f++++g  +++ +tl+  ++s +sW+  l+  ++ g+  l +GWk+F+ +ng+++gD+++ + ++
  Pavir.7NG076000.3.p 288 WVKKEINASTIENH-LNLPLPFCKAIGFRQRCMITLKTSTSSTKSWQACLNLYQNCGQ--LVGGWKSFCLDNGIRVGDVCTMEIIE 370
                          78999********9.***********99999999999999999*******88888877..789******************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.003185IPR003340B3 DNA binding domain
PROSITE profilePS5086310.87185IPR003340B3 DNA binding domain
PfamPF023621.4E-7382IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-14385IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-13385IPR015300DNA-binding pseudobarrel domain
CDDcd100172.35E-10382No hitNo description
SuperFamilySSF1019362.75E-17136237IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-19137237IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.66141238IPR003340B3 DNA binding domain
SMARTSM010191.2E-6143238IPR003340B3 DNA binding domain
PfamPF023626.6E-15144226IPR003340B3 DNA binding domain
CDDcd100171.02E-9153222No hitNo description
SuperFamilySSF1019363.92E-16285381IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.292287382IPR003340B3 DNA binding domain
PfamPF023625.2E-12288370IPR003340B3 DNA binding domain
SMARTSM010192.4E-4289382IPR003340B3 DNA binding domain
CDDcd100173.98E-10290372No hitNo description
Gene3DG3DSA:2.40.330.107.5E-16291381IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEKMPIPAKF LQQHIPKEHQ NNCMAIVLGP HGKVYNIKLE TYRSDMFFTG GWSQFMVFHD  60
ITESNALLVR YEGNMVFTVK VFGTDGIPRD SKQKENRAQQ RSTLPHSEKL QKAPSVSIQK  120
HKRKNKTSLG RNSIYKIGPP SWIKKQINTN TLEKHLALAK AFCDAIGLQK PCTITLRTSR  180
ADGTKSWLVH GLTCKTSSYL LVQGWRQFCQ ENHLKEGDTC TFNVIETTLW NVLITRHEEK  240
MNQFCYQETP KSKKNKSNTD GQKMLQGSMN YLNKSRTKSV FEIGPPAWVK KEINASTIEN  300
HLNLPLPFCK AIGFRQRCMI TLKTSTSSTK SWQACLNLYQ NCGQLVGGWK SFCLDNGIRV  360
GDVCTMEIIE TTLWNVTVDR REDRTR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG076000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825227.10.0putative B3 domain-containing protein Os04g0347400
TrEMBLA0A2T7CTG20.0A0A2T7CTG2_9POAL; Uncharacterized protein
TrEMBLA0A3L6QA510.0A0A3L6QA51_PANMI; Putative B3 domain-containing protein
STRINGPavir.J24325.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.17e-18B3 family protein