PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG075500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 555aa    MW: 61465.1 Da    PI: 9.2223
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG075500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.75.1e-19305389187
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                          ++k+ ++ ++lks+ l+l k+f++++g+  ++   ++l++   s +sW+v    r + ++ yv++ GWk+F+++n LkegD+++F+++g+
  Pavir.7NG075500.1.p 305 WIKKVINTSTLKSH-LSLAKDFCNAIGLRGPC--VIRLKTsmDSTESWQVHG--RTSENSsYVISHGWKRFCQENSLKEGDMCTFYVVGT 389
                          78999********9.***********999666..56666622666*******..5554445*************************8763 PP
2B358.11.6e-18458545191
                          EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ++k++++ +++k+ + ++lp  f+e++g+ +++++tl+   +sg sW+ ++   k+ + ++ ++GWk+F+++n++kegD+++F +++   
  Pavir.7NG075500.1.p 458 WVKKEINTSTMKHvHVFSLPLAFCEAIGLREPCTITLKTSMSSGTSWQTRVVPYKY-CNHLGGSGWKKFCQENRIKEGDVCTFNVVE--- 543
                          67888888888888999*************99999999888**********54555.57899*********************9654... PP

                          E. CS
                   B3  90 fe 91 
                          ++
  Pavir.7NG075500.1.p 544 TK 545
                          33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508636.78115108IPR003340B3 DNA binding domain
SMARTSM010191.318108IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-924110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.9E-828109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-15129231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-16131231IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.769133229IPR003340B3 DNA binding domain
CDDcd100176.47E-9134226No hitNo description
SMARTSM010194.9E-4136229IPR003340B3 DNA binding domain
SuperFamilySSF1019361.88E-18300399IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-18302398IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.407304400IPR003340B3 DNA binding domain
PfamPF023627.5E-15305395IPR003340B3 DNA binding domain
CDDcd100173.20E-12306390No hitNo description
SMARTSM010197.7E-8306400IPR003340B3 DNA binding domain
PfamPF023621.1E-15459551IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661459554IPR003340B3 DNA binding domain
SMARTSM010190.0022459554IPR003340B3 DNA binding domain
CDDcd100171.94E-12460539No hitNo description
SuperFamilySSF1019366.28E-17461553IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-17462553IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MSPGIPSCGN RGASGRKHLR VLLPFTCNSL RIPDELAAEI GAEEAFVVAP FGGKGRLRRV  60
EVGLDGDGAF LGRGWPEFAG ACGVARGWFL VLRHHGGGLL TVKAFDSCCC LRELATRSPA  120
VEEPMSSTDA SRRPQFISVL APDSMEKLLI PAKFVQNYMS KGLMNNCMAV LFGPFGKICQ  180
VELKINGPDN FLSGGWSQFL ALHGITETHC LLLRYEGNMA FTVKVFGPDG CQIKSKHNGV  240
RMQQISTVLN MEKQQELPSA SIQKCERKKD QLCSEERKKR KASMTSLEKA PLQKKSFYEI  300
GPPSWIKKVI NTSTLKSHLS LAKDFCNAIG LRGPCVIRLK TSMDSTESWQ VHGRTSENSS  360
YVISHGWKRF CQENSLKEGD MCTFYVVGTT LWHVVIMRCK EKVNQCCYQE TPSAASSKSK  420
TDNYISSEEQ KRPNGPMTSS NKASSKTICA FEIGPPAWVK KEINTSTMKH VHVFSLPLAF  480
CEAIGLREPC TITLKTSMSS GTSWQTRVVP YKYCNHLGGS GWKKFCQENR IKEGDVCTFN  540
VVETKLWHVV IARQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266280RKKDQLCSEERKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG075500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825039.10.0putative B3 domain-containing protein Os04g0347400 isoform X1
TrEMBLA0A0A9S1930.0A0A0A9S193_ARUDO; Uncharacterized protein
STRINGPavir.Gb02050.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.14e-16B3 family protein