PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG427800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | SBP | ||||||||
Protein Properties | Length: 382aa MW: 41664.3 Da PI: 7.7807 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.8 | 2e-40 | 158 | 236 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++ Pavir.7KG427800.1.p 158 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 236 6******************************98725689*************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.0E-34 | 153 | 221 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.291 | 156 | 234 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.97E-37 | 157 | 237 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.4E-31 | 159 | 233 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MMNLSAAANA TCDEFPYVAS NPAPPSLLPI MEQESSIQRE HQLGYNLEAN SLALLPPSNA 60 AGHHHATIAG HDILQFYPPS HYLAASGNPY GHFSAGSTFQ SYYPQAAQAA PEYYFPTLVS 120 SAEENMASFA ATQLGLNLGY RTYFPPRGGY TYGHHPPRCQ AEGCKADLSS AKRYHRRHKV 180 CEHHSKAPVV VTAGGLHQRF CQQCSRFHLL DEFDDAKKSC RKRLADHNRR RRKSKPSDAD 240 AGDKKRAHGN KAAAAKDKAG SSSKNMDIGD GLGTQMLGSA LLSKDQDQAM DLGEVVKEAV 300 DPKGKASMPQ HHGMHQHNHH GFPFHSSSAG SCFPQTQAVS GDTTSNIAQV QEPSLAFHHQ 360 HHQHSNILQL GQAMFDLDFE H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-27 | 159 | 233 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 228 | 245 | RRRRKSKPSDADAGDKKR |
2 | 229 | 234 | RRRKSK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Developing leaves. Present at highest levels in very young ligules and auricles. Present pre- and post-ligule and auricle development. | |||||
Uniprot | TISSUE SPECIFICITY: Leaf ligular region, blade and sheath. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the formation of ligules and auricles during leaf organogenesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG427800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ZMU89496 | 0.0 | U89496.1 Zea mays liguleless1 protein (liguleless1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960135.1 | 0.0 | protein LIGULELESS 1 | ||||
Swissprot | O04003 | 0.0 | LG1_MAIZE; Protein LIGULELESS 1 | ||||
TrEMBL | A0A3L6Q0D9 | 0.0 | A0A3L6Q0D9_PANMI; Protein LIGULELESS 1-like | ||||
STRING | Si022315m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6990 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 8e-43 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG427800.1.p |
Publications ? help Back to Top | |||
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