PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG421500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WOX | ||||||||
Protein Properties | Length: 239aa MW: 26496.1 Da PI: 9.7503 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.7 | 5.4e-20 | 90 | 149 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R++++++q+++Le l++ r+p+ ++e+++++l +++ ++V++WFqN++a+e++ Pavir.7KG421500.1.p 90 TRWNPSPDQIKVLEMLYRGgMRTPNSFQIEQITEELgkygRIEGKNVFYWFQNHKARERQ 149 8*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.8 | 4.3e-37 | 89 | 151 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +tRW+P+p+Qik+Le+ly+ G+rtPn+ +i++it+eL +yG+ie+kNVfyWFQN+kaRerqkq Pavir.7KG421500.1.p 89 TTRWNPSPDQIKVLEMLYRGGMRTPNSFQIEQITEELGKYGRIEGKNVFYWFQNHKARERQKQ 151 79***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.977 | 85 | 150 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-7 | 87 | 154 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.05E-12 | 88 | 155 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.21E-5 | 90 | 151 | No hit | No description |
Pfam | PF00046 | 1.2E-17 | 90 | 149 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-8 | 90 | 149 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MRLHHFHGVA YFDKPASPSP SSSPPSISSS SLSSSAATPL CAFHCLRPLA PKISFPEARK 60 MVVLPEFARV RNAARLLHCT LLQVPASGTT RWNPSPDQIK VLEMLYRGGM RTPNSFQIEQ 120 ITEELGKYGR IEGKNVFYWF QNHKARERQK QKRAALLTLS TTTTLSSLPA AETKDGLRKE 180 EASSEDASSR KRRRCRTWGD DDVHGDVTTT PTTTEVVADC TDDVTLELFP LRPQGKAN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 189 | 193 | RKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG421500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085195 | 1e-112 | BT085195.1 Zea mays full-length cDNA clone ZM_BFb0326G17 mRNA, complete cds. | |||
GenBank | EU964275 | 1e-112 | EU964275.1 Zea mays clone 277479 WUSCHEL-related homeobox 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823101.1 | 1e-112 | WUSCHEL-related homeobox 4-like isoform X2 | ||||
Swissprot | Q25AM2 | 4e-94 | WOX4_ORYSI; WUSCHEL-related homeobox 4 | ||||
Swissprot | Q7XTV3 | 4e-94 | WOX4_ORYSJ; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A3L6Q5Y1 | 1e-114 | A0A3L6Q5Y1_PANMI; WUSCHEL-related homeobox 4 | ||||
STRING | Pavir.Ga00299.1.p | 1e-134 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12692 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 3e-39 | WUSCHEL related homeobox 4 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG421500.1.p |