PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG380000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WOX | ||||||||
Protein Properties | Length: 317aa MW: 32718.4 Da PI: 8.3648 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.5e-18 | 31 | 91 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+t+t+eq++ L++l++ r p+ e+++++++ l +++ ++V++WFqN++a+e++ Pavir.7KG380000.1.p 31 SRWTPTPEQIKLLKDLYYGcgIRSPNSEQIQRITAMLrqygKIEGKNVFYWFQNHKARERQ 91 7*****************7568*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.1 | 7.1e-37 | 30 | 93 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +RWtPtpeQik+L++ly+ +G+r+Pn+e+iqrita+L++yGkie+kNVfyWFQN+kaRerqk+ Pavir.7KG380000.1.p 30 GSRWTPTPEQIKLLKDLYYgCGIRSPNSEQIQRITAMLRQYGKIEGKNVFYWFQNHKARERQKR 93 68****************999*****************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.13E-11 | 25 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.653 | 26 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-4 | 28 | 96 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.1E-16 | 31 | 91 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-6 | 31 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.21E-5 | 32 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MAANVGGRSV GGGAGAGGTG GAVAPCRASG SRWTPTPEQI KLLKDLYYGC GIRSPNSEQI 60 QRITAMLRQY GKIEGKNVFY WFQNHKARER QKRRLTNLDV NFPAAATAEA SHLGALSLSS 120 PSGAAPPSSP LGLYPGNGGG SALQLDTSSD WGSTTAMATE TCVLQDYMGV MRSTGGHHGS 180 SASAGAAASP WACLSSSDSW AAAAAAPTTT RAPETLPLFP TGDSSHPPRP RHGAPAPAGD 240 AIRGGYLPTL PFWGAAATAT TTTSVTIQQQ HHQLLQLQEQ YSFYTTTSQP QDASAATASL 300 ELSLSSWCCP YTAGTM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 12 | GGRSVGGG |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young leaf primordia. Expressed in branch an floral meristems. Transiently expressed in the shoot apex. {ECO:0000269|PubMed:16284419}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor required for the formation and development of tiller buds and panicles (PubMed:25697101). Required for tiller formation and female sterility (PubMed:27194802). Required for the early developmental stages of axillary meristem formation (PubMed:25841039). Plays a role in maintaining the axillary premeristem zone and in promoting the formation of the axillary meristem by promoting OSH1 expression (PubMed:25841039). Does not seem to be involved in maintenance of the shoot apical meristem (SAM) (PubMed:25841039). {ECO:0000269|PubMed:25697101, ECO:0000269|PubMed:25841039, ECO:0000269|PubMed:27194802}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG380000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by the cytokinin 6-benzylaminopurine. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM234745 | 1e-128 | AM234745.1 Zea mays mRNA for WUS2 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826282.1 | 1e-167 | WUSCHEL-related homeobox 1A-like | ||||
Swissprot | Q7XM13 | 2e-73 | WOX1_ORYSJ; WUSCHEL-related homeobox 1 | ||||
TrEMBL | A0A3L6Q044 | 1e-167 | A0A3L6Q044_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ga00150.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12465 | 31 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 7e-34 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG380000.1.p |
Publications ? help Back to Top | |||
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