PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG355500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 156aa MW: 17210.3 Da PI: 6.1196 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 29.3 | 1.9e-09 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+ gLt++h+kSHLQkYR+ Pavir.7KG355500.1.p 1 MNSGGLTIYHIKSHLQKYRI 20 8999***************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-8 | 1 | 21 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 2.0E-23 | 51 | 97 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MNSGGLTIYH IKSHLQKYRI AKYMPASTSE GKQEKRSAGN DAQNLDPSTG MQITEALRVQ 60 LDVQRRLHEQ LEIQRNLQLR IEAQGKKLQK MFEEQLKASR TVMEPPPEEH TVQGVGAGAF 120 AGVGEQDDED AFDDVQLLPV AGSGYSDARF PSKIS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG355500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068513 | 1e-112 | BT068513.1 Zea mays full-length cDNA clone ZM_BFb0272J03 mRNA, complete cds. | |||
GenBank | EU957486 | 1e-112 | EU957486.1 Zea mays clone 1594418 transfactor mRNA, complete cds. | |||
GenBank | KJ726831 | 1e-112 | KJ726831.1 Zea mays clone pUT3371 G2-like transcription factor (GLK52) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822779.1 | 1e-96 | probable transcription factor KAN2 | ||||
Refseq | XP_025822780.1 | 1e-96 | probable transcription factor KAN2 | ||||
Swissprot | Q9SJW0 | 7e-39 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A2S3IBB0 | 3e-95 | A0A2S3IBB0_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7D1E3 | 3e-95 | A0A2T7D1E3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga00160.1.p | 1e-107 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6933 | 37 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.2 | 5e-42 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG355500.1.p |