PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG344000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 335aa MW: 37957.1 Da PI: 10.355 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 52.4 | 1.7e-16 | 86 | 164 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e GF vr ++ +k+ ++ tk + vCs+eg++++++ ++ rt+C ak+++++++d+ w++++++ HnH l+ Pavir.7KG344000.1.p 86 DFYNLYSWEKGFGVRFDRGRKN-ASKYQTKLDIVCSCEGTSKNSN----------SSIRTDCAAKIRLHRRSDHAWYISSVNDTHNHRLT 164 6*****************9999.666699**********988765..........559*****************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-12 | 86 | 164 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 9.8E-7 | 286 | 326 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MHRRQLKKRV GACRAQASEL MCQSRQTSLD LRRGPGARNG PDYRDAPSEE SAITRALRRA 60 ATAPLGAPIF FPHEGTTFNS HEKARDFYNL YSWEKGFGVR FDRGRKNASK YQTKLDIVCS 120 CEGTSKNSNS SIRTDCAAKI RLHRRSDHAW YISSVNDTHN HRLTEAYSEN KQWKSHGYID 180 PSTKDLIKKL RENNISVGRI CNILGVSDGG SRARMRKESV RSICAKLAQE NMRDDIGKTL 240 RLLDKMKETD PGLEVRFQID SGGRLKTMLW CTGKNRLDYA TFGDAITFDT TYRTNLYSLP 300 FGLFMGVNNH FQSIVLGGLL LTSEKNIRLR MGIY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG344000.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822596.1 | 1e-134 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_025822597.1 | 1e-134 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A0A9TKT4 | 1e-121 | A0A0A9TKT4_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J17524.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 2e-25 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG344000.1.p |