PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.7KG299300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 222aa MW: 24664 Da PI: 6.5492 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 30 | 1.1e-09 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m++kgLtl+h+kSHLQkYRl Pavir.7KG299300.2.p 1 MGMKGLTLYHLKSHLQKYRL 20 899****************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-8 | 1 | 21 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 2.1E-21 | 64 | 110 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 222 aa Download sequence Send to blast |
MGMKGLTLYH LKSHLQKYRL GRQGKKSSVL ELANGSGFAA QGLSFPTPTP VPGVPGEGKN 60 TGEMPLADAL RYQIQVQRKL QEQLEVQKKL QMRIEAQGKY LKAIIEKAER NISFDASAPS 120 DNIESTRSQL MDFNLALSGF MDNATRVCEE SNDQLEKAIS DDNLKDNLGF QLYQLGSQEA 180 KEDKWTPKTE ESLRLDLNIK GGYDLSSRGI QPCELDLKIN Q* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.44240 | 0.0 | leaf |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.7KG299300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824515.1 | 1e-143 | myb family transcription factor PHL11-like | ||||
TrEMBL | A0A2T7CZJ2 | 1e-144 | A0A2T7CZJ2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga00732.1.p | 1e-160 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G45580.1 | 6e-25 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.7KG299300.2.p |