PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.7KG266200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 279aa MW: 28981.3 Da PI: 7.4061 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 179.1 | 2.6e-55 | 28 | 231 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas..qllaaeshldeslkee............lleelkveeen 81 eq+Cyv+C+ C+tilav vP +slfk+vtvrCGhC++llsvnl ++ aa+++l + + ll+e+ +++ Pavir.7KG266200.1.p 28 EQEQLCYVHCKCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLCGLLlpTAAAANNQLPFGGGGQqqallsptsphgLLDEMMPFQQA 117 679******************************************999833444555555444433367899999999955555555555 PP YABBY 82 lksnvek..eesastsvssekl......................senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPd 146 l+ + + + + st +s ++ e + +p+ ++ ekrqrvPsaynrfik+eiqrikasnPd Pavir.7KG266200.1.p 118 LSLPTAEpaSACVSTITSINNScgggnnapvmsamapppppvkpAPPEPQLLPKSTAsGNKTAEKRQRVPSAYNRFIKDEIQRIKASNPD 207 54433330033333333333335666666666777898888876555667777766658******************************* PP YABBY 147 ishreafsaaaknWahfPkihfgl 170 i+hreafsaaaknWahfP+ihfgl Pavir.7KG266200.1.p 208 ITHREAFSAAAKNWAHFPHIHFGL 231 **********************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 9.3E-63 | 28 | 231 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.28E-7 | 169 | 224 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.5E-4 | 181 | 223 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 8.90E-5 | 185 | 221 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence Send to blast |
MMSSVPVPET MFALADQHLA PQQPAAAEQE QLCYVHCKCC DTILAVGVPC SSLFKTVTVR 60 CGHCANLLSV NLCGLLLPTA AAANNQLPFG GGGQQQALLS PTSPHGLLDE MMPFQQALSL 120 PTAEPASACV STITSINNSC GGGNNAPVMS AMAPPPPPVK PAPPEPQLLP KSTASGNKTA 180 EKRQRVPSAY NRFIKDEIQR IKASNPDITH REAFSAAAKN WAHFPHIHFG LMPDQGLKKT 240 SIQSQEGGEC MLSKDGLYAA AAAAAAAAAA STMGIAPF* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.9404 | 0.0 | callus |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf primordia, young leaves, floret meristems, floral organ primordia, stamens and carpels. Does not show polar expression pattern. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17351053}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.7KG266200.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976365.1 | 1e-155 | protein YABBY 5 | ||||
Swissprot | Q01JG2 | 1e-112 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 1e-112 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A3L6PYL5 | 1e-156 | A0A3L6PYL5_PANMI; Protein YABBY 5-like | ||||
STRING | Pavir.Ga00891.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-51 | YABBY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.7KG266200.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|