PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG264200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 385aa MW: 40406.6 Da PI: 8.8158 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.3e-16 | 90 | 137 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd+llvd v+ G+g+W+ ++ g++R++k+c++rw +yl Pavir.7KG264200.1.p 90 KGPWAPEEDKLLVDFVQANGPGNWRMLPKLAGLNRCGKSCRLRWTNYL 137 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 8.8e-17 | 143 | 188 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++TteE+ ++++++ G++ W+ Ia+ ++ gRt++++k++w+++l Pavir.7KG264200.1.p 143 RGPFTTEEHNSILQLHAIVGNK-WSMIAAQLP-GRTDNEIKNYWNTHL 188 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.256 | 85 | 137 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.76E-30 | 87 | 184 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-12 | 89 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-14 | 90 | 137 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-22 | 91 | 144 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.74E-9 | 92 | 137 | No hit | No description |
PROSITE profile | PS51294 | 26.601 | 138 | 192 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-14 | 142 | 190 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 143 | 188 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-26 | 145 | 192 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.50E-11 | 145 | 188 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MPCPFPSSLQ ACRQQQQQVK IRCIYGHRDP PRPINPSAFM ATAPPPSLTC RHCRRHRGRK 60 RESDRRRSVA AAAAAAMGRT PCCDSKGIKK GPWAPEEDKL LVDFVQANGP GNWRMLPKLA 120 GLNRCGKSCR LRWTNYLRPD IKRGPFTTEE HNSILQLHAI VGNKWSMIAA QLPGRTDNEI 180 KNYWNTHLKK QLRQEALAGA DATAAAQLAA AATASSCPAT RHMAQWEAAR LEAEARLSLL 240 SSSAATTVTS ATAASSSSST AAAAEHEAAP DIFLRLWNSA VGESFRCSAS LGQGAAAAHG 300 PAAAAGAPAA LPPATAPSGG GGGGGGDSSA ASTNGTEAAD DYQAFLDMAV EELALLHGRL 360 GVSFSAFPPA DMLAEASCLF APFE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 90 | 192 | 7 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 61 | RRHRGRKRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG264200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108621 | 1e-118 | AK108621.1 Oryza sativa Japonica Group cDNA clone:002-147-D04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825374.1 | 1e-151 | transcription factor MYB41-like | ||||
TrEMBL | A0A2S3I8U3 | 1e-154 | A0A2S3I8U3_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CXW3 | 1e-154 | A0A2T7CXW3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga01101.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5409 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 2e-69 | myb domain protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG264200.1.p |