PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG242700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 399aa    MW: 43276.3 Da    PI: 6.5844
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG242700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.85.9e-29206260155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k r+rWt+e+H+rF++av+qLGG e+A Pk+il++m+v+gLt+++vkSHLQkY+l
  Pavir.7KG242700.1.p 206 KVRRRWTTEMHDRFIDAVNQLGGCENAKPKAILDIMNVEGLTRDQVKSHLQKYKL 260
                          679**************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.923203263IPR017930Myb domain
SuperFamilySSF466891.43E-17204262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27204261IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-23206261IPR006447Myb domain, plants
PfamPF002498.5E-9208259IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MSFHYESLYP HDMTFLHSSP ASTGAPCSAS IASSSSTFST AMAHGRFPNL LPSIVHSLNA  60
EILYSNLISH SGVSEQPLGG TYPGLPAETT HSADHLGGLL NNNGINSVEK QPDSGSVRDP  120
NPNESAERDE WFCLEHGGLD YIIPDDLTLN YPQMAESAHV SSPLNSETSQ HEHIVHQLVS  180
VPTIPGQLYP VSPPATINVH SPQRTKVRRR WTTEMHDRFI DAVNQLGGCE NAKPKAILDI  240
MNVEGLTRDQ VKSHLQKYKL AQVRHRSSKV GGTSVETTTS NEAIPSDVQM RIQKFALQVQ  300
IELQKKLHEM VERTRHDLLE IHRSILQNHV TSLHELEEQQ NLNTDGRTAR LRPSPPAAAA  360
AAAAPPPVVA LSRMTGQGSR AAASAQDGLV SEAGSLGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-17206264260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-17206264260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-17206264260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-17206264260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-17206264260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-17206264260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-17206264260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-17206264260Protein PHOSPHATE STARVATION RESPONSE 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG242700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825635.10.0protein PHOSPHATE STARVATION RESPONSE 2-like isoform X1
TrEMBLA0A2T7CXB80.0A0A2T7CXB8_9POAL; Uncharacterized protein
TrEMBLA0A2T8ID140.0A0A2T8ID14_9POAL; Uncharacterized protein
STRINGPavir.Ga01294.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16835911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.33e-24G2-like family protein