PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG242700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 399aa MW: 43276.3 Da PI: 6.5844 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.8 | 5.9e-29 | 206 | 260 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWt+e+H+rF++av+qLGG e+A Pk+il++m+v+gLt+++vkSHLQkY+l Pavir.7KG242700.1.p 206 KVRRRWTTEMHDRFIDAVNQLGGCENAKPKAILDIMNVEGLTRDQVKSHLQKYKL 260 679**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.923 | 203 | 263 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.43E-17 | 204 | 262 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 204 | 261 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-23 | 206 | 261 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.5E-9 | 208 | 259 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MSFHYESLYP HDMTFLHSSP ASTGAPCSAS IASSSSTFST AMAHGRFPNL LPSIVHSLNA 60 EILYSNLISH SGVSEQPLGG TYPGLPAETT HSADHLGGLL NNNGINSVEK QPDSGSVRDP 120 NPNESAERDE WFCLEHGGLD YIIPDDLTLN YPQMAESAHV SSPLNSETSQ HEHIVHQLVS 180 VPTIPGQLYP VSPPATINVH SPQRTKVRRR WTTEMHDRFI DAVNQLGGCE NAKPKAILDI 240 MNVEGLTRDQ VKSHLQKYKL AQVRHRSSKV GGTSVETTTS NEAIPSDVQM RIQKFALQVQ 300 IELQKKLHEM VERTRHDLLE IHRSILQNHV TSLHELEEQQ NLNTDGRTAR LRPSPPAAAA 360 AAAAPPPVVA LSRMTGQGSR AAASAQDGLV SEAGSLGQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-17 | 206 | 264 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-17 | 206 | 264 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-17 | 206 | 264 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-17 | 206 | 264 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-17 | 206 | 264 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-17 | 206 | 264 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-17 | 206 | 264 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-17 | 206 | 264 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG242700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825635.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 2-like isoform X1 | ||||
TrEMBL | A0A2T7CXB8 | 0.0 | A0A2T7CXB8_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8ID14 | 0.0 | A0A2T8ID14_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga01294.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16835 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.3 | 3e-24 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG242700.1.p |