PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG154800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 249aa    MW: 25424.2 Da    PI: 6.9482
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG154800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-2073122255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae+Aa+a++aa+++++g
  Pavir.7KG154800.1.p  73 VYRGVRRRP-WGKWAAEIRDPQ----KaARVWLGTFATAEDAARAYDAAALRFRG 122
                          69*******.**********93....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.64E-2373131IPR016177DNA-binding domain
PROSITE profilePS5103225.64673130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3273131IPR001471AP2/ERF domain
SMARTSM003801.7E-3573136IPR001471AP2/ERF domain
PfamPF008473.8E-1473122IPR001471AP2/ERF domain
PRINTSPR003671.3E-117485IPR001471AP2/ERF domain
CDDcd000181.73E-1974130No hitNo description
PRINTSPR003671.3E-1196112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MWIGAMVAPT PPVVPSEQAL AAETAAIVSA LTHVVASGRG PPRPATAIVV PWQHAGEGGS  60
SSGAGQEQLA GAVYRGVRRR PWGKWAAEIR DPQKAARVWL GTFATAEDAA RAYDAAALRF  120
RGSRARLNFP EDAAARRARD AEAASAGLPA ALLESQAAGA GAGDDMADYL EYSRILEGGE  180
PSGGIMDGLF GGDGNGRFLG SWSIGTSPPS SGSGAATSAP LLRHSDGGKQ SSNDSIGDCN  240
HFARCTNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2371130363ATERF1
3gcc_A4e-2371130363ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG154800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126123e-70CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822865.12e-91ethylene-responsive transcription factor ERF110-like
TrEMBLA0A3L6QA862e-94A0A3L6QA86_PANMI; Uncharacterized protein
STRINGPavir.J15316.1.p1e-130(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142992022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.13e-21ERF family protein