PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG140000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 649aa MW: 67954.1 Da PI: 9.2937

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG140000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.3	3.4e-13	175	236	1	62
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e++ +r+ r+++NRe+A+ sRqRKk + eeLeekvk++ + +L ++++ + e a+l+++ Pavir.7KG140000.1.p 175 EEDKRRTARLMRNRESAQLSRQRKKRYFEELEEKVKSMHSVINDLNSKISFIVAENATLRQQ 236 5677899*******************************999****9999999988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-14	174	239	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.5E-11	176	237	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.933	177	237	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.13E-12	179	237	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.4E-16	179	237	No hit	No description
CDD	cd14704	3.34E-19	180	231	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005783	Cellular Component	endoplasmic reticulum
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence Send to blast
MAEPALLDPS PFDLRHYPAH LFDPDLPLAG GDLPLGGFAG DDGLDFDLPA DFSVDDFLLR 60 SPDRGGEGDD SGEGSAAGSG PAASTSASPV TSAANSAVAS AGDREVKHED SDEGRSGAAP 120 NWSLKRKQAS AGASSDGAKC RRSGDGELSP SASASASASR AAAEDSDERG AGGEEEDKRR 180 TARLMRNRES AQLSRQRKKR YFEELEEKVK SMHSVINDLN SKISFIVAEN ATLRQQLGGG 240 GVSGPPPGVY PPPLPGIHFP WVPGYAMRPH GSHVPLVPIP RLKPQQTAAA AKVSKKPEVK 300 KAAESKSKAK TKKVASVSLL GLLFVALVFG AFVPGFNHSF GMSGRSNDVI FGNFGRSDAR 360 VFSVTNHGKG PKGGLNSSGM IDADPGMAGN ADGAGQKHHP AHNSSEILPA LLYVPRNGKH 420 VKINGNLIIH SVLASEKAVA HRASTGQSVK DHKETSVAIA RYLSPTGKDT DSKETFPPDA 480 SLPQWFREGM EGPILNSGMC SEVFQFNISA ASAKSGGIIP ASPTVNSSSV NATQKIPKPA 540 PAYGGKLKNR RIMYNEAIPL TGKTVNNTEP QAFNSTSESS KVPDSKPASS VVVSVLADPR 600 EAGNGDGDPR VSPKPLSRIF VVVLLDGVRY VTYSCTLPFK SVSPHLVN*

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence Send to blast

MAEPALLDPS PFDLRHYPAH LFDPDLPLAG GDLPLGGFAG DDGLDFDLPA DFSVDDFLLR  60
SPDRGGEGDD SGEGSAAGSG PAASTSASPV TSAANSAVAS AGDREVKHED SDEGRSGAAP  120
NWSLKRKQAS AGASSDGAKC RRSGDGELSP SASASASASR AAAEDSDERG AGGEEEDKRR  180
TARLMRNRES AQLSRQRKKR YFEELEEKVK SMHSVINDLN SKISFIVAEN ATLRQQLGGG  240
GVSGPPPGVY PPPLPGIHFP WVPGYAMRPH GSHVPLVPIP RLKPQQTAAA AKVSKKPEVK  300
KAAESKSKAK TKKVASVSLL GLLFVALVFG AFVPGFNHSF GMSGRSNDVI FGNFGRSDAR  360
VFSVTNHGKG PKGGLNSSGM IDADPGMAGN ADGAGQKHHP AHNSSEILPA LLYVPRNGKH  420
VKINGNLIIH SVLASEKAVA HRASTGQSVK DHKETSVAIA RYLSPTGKDT DSKETFPPDA  480
SLPQWFREGM EGPILNSGMC SEVFQFNISA ASAKSGGIIP ASPTVNSSSV NATQKIPKPA  540
PAYGGKLKNR RIMYNEAIPL TGKTVNNTEP QAFNSTSESS KVPDSKPASS VVVSVLADPR  600
EAGNGDGDPR VSPKPLSRIF VVVLLDGVRY VTYSCTLPFK SVSPHLVN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	199	KRRTARLMRNRESAQLSRQRKKR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.16336	0.0	callus\| leaf\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in leaf blade, and at lower levels in roots, leaf sheaths, flowers and seeds. {ECO:0000269\|PubMed:22084314}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22084314}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG140000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269\|PubMed:22084314}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807265.1	0.0	bZIP transcription factor 39-like
Swissprot	Q6AU90	0.0	BZP39_ORYSJ; bZIP transcription factor 39
TrEMBL	A0A2S3HC05	0.0	A0A2S3HC05_9POAL; Uncharacterized protein
STRING	Pavir.J18543.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8228	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	2e-88	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.7KG140000.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]