PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG131500.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 367aa    MW: 40241.6 Da    PI: 10.2771
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG131500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.19.6e-111422241198
                          HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++   + +p kf+++h  +++ ++++ ++  ++g++ ++kl  +  ++ +++++GW++F   +++ e   ++ +++g++ f  +vkvf 
  Pavir.7KG131500.2.p 142 ME--KMLIPAKFVQQHiPKEHWNNRMAIVLGPHGKVHDIKL--ETDRSDMFFSGGWSQFMVFHDITESNALLVRYEGNMVF--TVKVFG 224
                          33..389*********9667778999***************..88888899*****************************9..888885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-623104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-723106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.85154104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-15129226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-16130227IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.46130226IPR003340B3 DNA binding domain
CDDcd100172.50E-13131223No hitNo description
SMARTSM010191.3E-6133226IPR003340B3 DNA binding domain
PfamPF023624.8E-8141223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MASPGDHAAA AKHLRVLLPF TCDSLRIPDE VAEEIGAGEA LVAGPLGGKG KALWRVEVGR  60
DGDGAFLGRG WPELADACGV GAGWLLVLCH RGRGVLTCKA FDDTHCLRDL GAPAPPPAEA  120
AVSGKATARK PQFIIVLPTD FMEKMLIPAK FVQQHIPKEH WNNRMAIVLG PHGKVHDIKL  180
ETDRSDMFFS GGWSQFMVFH DITESNALLV RYEGNMVFTV KVFGSDGFQR DSKQKENRAQ  240
QRSTLPHSEM FQKAPSVSIQ KHKRKNKTSL QRNSIYKIGL PSWIKKQINT NTLEKHLALA  300
KAFCDAIGLQ EPCTITLRTS RTDATCLCRV GGSSARRTIS RKGIPAPSMS SKPHCGMYLS  360
RVIRKR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.357364e-52leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG131500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825227.10.0putative B3 domain-containing protein Os04g0347400
TrEMBLA0A2S3I5M40.0A0A2S3I5M4_9POAL; Uncharacterized protein
TrEMBLA0A2T8IBN30.0A0A2T8IBN3_9POAL; Uncharacterized protein
STRINGPavir.Ga02461.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-08B3 family protein