PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG131200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 507aa    MW: 56434.3 Da    PI: 9.616
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG131200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.3e-16301378586
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              ++++++ l l   f++++g+++++ +tl+   +s +sW+v      ++++y l+ GW++F+k+n+Lk gD+++F  ++
  Pavir.7KG131200.1.p 301 Q--INANTLRELALQTAFCDAIGLQEPCIITLKTSMSSTKSWQVHA--LPRRRSYRLRLGWSRFCKENDLKLGDICTFDIVE 378
                          4..4455566799************99988888888999*******..999999************************9654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.07316104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-824106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-924106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.75554104IPR003340B3 DNA binding domain
PROSITE profilePS508639.009131227IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-15132229IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.0E-14133229IPR015300DNA-binding pseudobarrel domain
CDDcd100172.03E-8134224No hitNo description
SMARTSM010192.0E-4134227IPR003340B3 DNA binding domain
SuperFamilySSF1019361.84E-16291389IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-17294388IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.251295390IPR003340B3 DNA binding domain
SMARTSM010190.014298392IPR003340B3 DNA binding domain
PfamPF023622.9E-13302380IPR003340B3 DNA binding domain
CDDcd100174.85E-9303374No hitNo description
PROSITE profilePS508638.501434506IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-6437506IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-7438506IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MASSVGGAAA MAKHPRVLLP FTCDSLRIPD ELAAEIGAGE ALVVGPSAGK VKLWRVEVGW  60
DGDVAFLGRG WPEFAGACGV DAGWLLVLRH RGRGVLTVKV FDASSCLREL VAQPPAAAAV  120
EATTSGQGTR KLQFIRVLPK DFMKKMLIPA KFMQHYILNE HLNNRTAIIF GPLGKVSHIE  180
IEMNQSDVFF SGGWSQFLVL HDITESNALL LRYEGNMVFT VKVFEPDGCQ RESKTKDIRM  240
QQDIEEQQEA PSISIQKHYK NDLSSNNGEK KPKGPVTCLT KAPLWTKSVF EVGPPSWIKK  300
QINANTLREL ALQTAFCDAI GLQEPCIITL KTSMSSTKSW QVHALPRRRS YRLRLGWSRF  360
CKENDLKLGD ICTFDIVETT LWLVVVTRCK EKMNQLYYQE KPKRKKERSS GHGQKRPKSS  420
ISRIGCVFEI GPPAWLKKEI NTSTISNHLS VPLSLCQAIG FQEPCTMITL KTSVSSTKSW  480
QARLLAYRNG NQMTGSGWKS FCCEND*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG131200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825040.10.0putative B3 domain-containing protein Os04g0347400 isoform X2
TrEMBLA0A3L6PUX60.0A0A3L6PUX6_PANMI; Putative B3 domain-containing protein
STRINGPavir.Ga02463.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.12e-13B3 family protein