PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG130300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 453aa    MW: 50706.1 Da    PI: 10.0117
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG130300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07394437243
                          SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                          ++WT+   + lv+a k ++++   +W+++a+ ++ g+t  qck +
  Pavir.7KG130300.1.p 394 DAWTETQVLALVQALKAFPKDasqRWERVAAAVP-GKTVVQCKKK 437
                          58********************************.********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.924261316IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.1E-5263308IPR009057Homeodomain-like
SuperFamilySSF466891.57E-7263309IPR009057Homeodomain-like
SMARTSM007171.2E-4265318IPR001005SANT/Myb domain
CDDcd001679.69E-4268308No hitNo description
SMARTSM007172.0E-5392444IPR001005SANT/Myb domain
SuperFamilySSF466892.99E-8394447IPR009057Homeodomain-like
PfamPF002493.4E-6395437IPR001005SANT/Myb domain
CDDcd001675.78E-5395437No hitNo description
Gene3DG3DSA:1.10.10.602.7E-4395437IPR009057Homeodomain-like
PROSITE profilePS500906.191396437IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MRNGRWSVTQ PIPSLGDDAT PIEEVDKFYN FWYNFKSWRE FPDDDEYDLE QAESREHKRW  60
MERQNAKLQE KAKKAEYARV RTLVDNAYKK DPRIQRRKDE EKAEKQRRKE AKYLAKKQQE  120
EEAARAAEEE RKRKEEEAKK AAEVALNQKK LKEKEKKLLR KEKTRLRTLA APVVAESHFG  180
LSDEDVETAC ASLDMEQLKK LGDSMEGKDA AEKARLLSSA LHKESSSKEA KKSDANGVES  240
SASKSNSTGG KAAQGSSILN SYEKKERPWG KEEVEMLRKA MVKYPKGTSR RWEVISEFIG  300
TGRSVEEILK ATKTVLLQKP DSTKAFDSFL EKRKPAQSIA SPLSTRDETV SSSTEGAGTA  360
SSKAVAQPAS SQTANGKSAA DPVPDVAPSV TDPDAWTETQ VLALVQALKA FPKDASQRWE  420
RVAAAVPGKT VVQCKKKVAA MRENFRSKKS GE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A3e-1549533124Zuotin
5dje_B3e-1549533124Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130151RKRKEEEAKKAAEVALNQKKLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.94600.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG130300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823394.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A3L6PT590.0A0A3L6PT59_PANMI; Uncharacterized protein
STRINGPavir.Ga01997.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-129DnaJ domain ;Myb-like DNA-binding domain