PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG085500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 308aa MW: 34730.4 Da PI: 8.5968

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG085500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	146	2e-45	18	149	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkya....tgkrknratksgyWkatg 87 pGfrFhPt+eel+ +yLk+ ++gkkl++ ++i++v++y+++Pw+Lp + +e+ewyfF++rd+k++ g r++r+t++g+Wkatg Pavir.7KG085500.1.p 18 PGFRFHPTEEELLEFYLKQVAQGKKLKF-DIIPTVQLYRHDPWELPgLARIVGEREWYFFVPRDRKHHqagaAGGRPSRTTERGFWKATG 106 9************************9.99***********533335789******9985555577*********** PP NAM 88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +d++v ++ ++l+glkktLv+y+grap+g+ktdWvm+eyrl Pavir.7KG085500.1.p 107 SDRAVRCAadPKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 149 **98777788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-53	9	174	IPR003441	NAC domain
PROSITE profile	PS51005	53.409	16	174	IPR003441	NAC domain
Pfam	PF02365	5.9E-24	18	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MDHQRRRGAS TQEVDELPGF RFHPTEEELL EFYLKQVAQG KKLKFDIIPT VQLYRHDPWE 60 LPGLARIVGE REWYFFVPRD RKHHQAGAAG GRPSRTTERG FWKATGSDRA VRCAADPKRL 120 IGLKKTLVYY EGRAPRGTKT DWVMNEYRLP VHDDAASPPK NVQEDIVLCK VYRKAVSLKE 180 LEQRVAMEEL ARAASASCTP SASGHNDTAG SPTDDSTMSS SRSDHHQAQQ GETMMGVAIP 240 PASVCRMKKE VMAESTTAVL RPATLSLPQL DVAKQQQEWM QDPFLTQLRS PWMESWSPYF 300 ASSVLNF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-45	5	174	4	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG085500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU967633	1e-161	EU967633.1 Zea mays clone 304978 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811820.1	1e-157	NAC domain-containing protein 22-like
Swissprot	Q10S65	1e-99	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A3L6PHH4	1e-162	A0A3L6PHH4_PANMI; NAC domain-containing protein 67-like
STRING	Pavir.J01198.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	2e-81	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	Pavir.7KG085500.1.p

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]