PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG012500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 485aa    MW: 54074.3 Da    PI: 9.4641
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG012500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.22e-20266352696
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          +++++lk +rlvlp+ f++++g+ +++++tl+  +  +rsW++    + +++r y+l++GW++F+ +n+LkegD+++F +++  +++ +v
  Pavir.7KG012500.1.p 266 INANTLK-HRLVLPNAFCDAIGLLERCTITLKTASNGSRSWQLHG--CPCKDRrYLLAQGWRRFCLENNLKEGDICTFNVIE--STTWHV 350
                          4555555.57**************99*98888888888*******..6665555*************************765..555566 PP

                          EE CS
                   B3  95 kv 96 
                           +
  Pavir.7KG012500.1.p 351 NI 352
                          65 PP
2B341.42.7e-133994721185
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 
                          + ++ +++p  f++++g+ +++ +t +   +s  sW+v++    ++++ +  ++ Wk+F+++n++kegD+++F  +
  Pavir.7KG012500.1.p 399 MIRAYISFPAAFCDAIGLREASMITFKTSLSSTSSWQVRVL--PYKNTsHQVGSVWKRFCRENEIKEGDVCTFNIV 472
                          45567899***********98866666555888*******3..3333337799********************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-73287IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-73386IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.2193585IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-12108207IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-15109208IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.798112208IPR003340B3 DNA binding domain
CDDcd100172.71E-10113205No hitNo description
SMARTSM010190.0032115208IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-19259355IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.59260356IPR003340B3 DNA binding domain
SMARTSM010197.6E-11262356IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-21263354IPR015300DNA-binding pseudobarrel domain
PfamPF023629.9E-17269351IPR003340B3 DNA binding domain
CDDcd100172.52E-13272340No hitNo description
SuperFamilySSF1019361.14E-13387482IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-14388482IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.066389484IPR003340B3 DNA binding domain
SMARTSM010190.038395484IPR003340B3 DNA binding domain
CDDcd100176.57E-8396469No hitNo description
PfamPF023629.7E-11401473IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MTSPGNQGAA KAQGRRGIGA EEALIVGPAG GKVIWPVEVG QDGDDTFLGR GWHEFAEACG  60
VGAGWLLVLR HRGRGVLSAK AFDATFCVRE LGGPPAPPAG EATASIKDST HKPKFIRVLP  120
RGFMEKMLIP AKFVQQYIPK ELLDNRMAII LGPGGKVYNI MLEVGHWGVF FAGGWSQFLM  180
VHDITEANSL LLRYEGNMVF TVKVFETHGY QREAKHKENR VLQTSTLPTV SGEKKPQDSR  240
TSLDQTSFKK TYVYEIGPPS WIEKQINANT LKHRLVLPNA FCDAIGLLER CTITLKTASN  300
GSRSWQLHGC PCKDRRYLLA QGWRRFCLEN NLKEGDICTF NVIESTTWHV NITRCKEKIN  360
QIYQNKRKSS ISLKSALSCA NGVYEVGPPA WIKEISTRMI RAYISFPAAF CDAIGLREAS  420
MITFKTSLSS TSSWQVRVLP YKNTSHQVGS VWKRFCRENE IKEGDVCTFN IVESLLWHVV  480
VDRC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG012500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684232.10.0putative B3 domain-containing protein Os04g0347400
TrEMBLA0A3L6Q5T30.0A0A3L6Q5T3_PANMI; Putative B3 domain-containing protein
STRINGPavir.J00272.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31615.11e-15B3 family protein