PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG362800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 544aa    MW: 59417.7 Da    PI: 4.2051
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG362800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.45.8e-53191471129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelv++yLk+kv g++l++ ++i+evd+yk+ePwdLp+  ++++++++wyfFs+ d+k+a+  r+nrat+ gyWk+tgk
  Pavir.6NG362800.2.p  19 LAPGFRFHPTDEELVSYYLKRKVLGRPLKV-DAIAEVDLYKLEPWDLPArsRLRSRDSQWYFFSRLDRKHANRARTNRATSGGYWKTTGK 107
                          579***************************.99***************4357888999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          d+ev + + + vg+kktLvf+ grapkge+t+Wvmheyrle
  Pavir.6NG362800.2.p 108 DREVRH-GPRIVGMKKTLVFHAGRAPKGERTNWVMHEYRLE 147
                          ******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6113167IPR003441NAC domain
PROSITE profilePS5100559.42319167IPR003441NAC domain
PfamPF023651.5E-2821146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MTHPSSSAPP PAAAEATSLA PGFRFHPTDE ELVSYYLKRK VLGRPLKVDA IAEVDLYKLE  60
PWDLPARSRL RSRDSQWYFF SRLDRKHANR ARTNRATSGG YWKTTGKDRE VRHGPRIVGM  120
KKTLVFHAGR APKGERTNWV MHEYRLEGEE ASGIPQDSFV VCRIFQKAGP GPQNGAQYGA  180
PFVEEEWEED DEDVGLLPVE GDAVVDHEVP PAPKEIPGAL EKGYLQMSDL IQGLGDQNGN  240
GTIGLPVSDT SNNSNHSEDV DGNSGDILSD PNLASNFLQY VEPGEQNSLM LNGNMISNAN  300
AGYFLNNFSP SDGFLELKDF ADAANLDCPV GNESTVCPSD GWAWKTPDSL ETVNGANNDI  360
PPLPDDQIFQ PDELEQLLQS IQEDSHFGSS VIDPPHSSIT NSVMPEDDSL MFYDAPFDST  420
MCDDGFRQVN GILNSPATNL SGIGMVDDGM PYYDAMDDNL FNDILGNIQQ SAGSSHAFNG  480
PVLTQEVNNT MYTYSPTQKV LEPNFVVGAP SSARLPEAGS QLNCVVLPGN LLWKITIGQL  540
YDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-47141679168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.33681e-118callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG362800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639170.0BT063917.1 Zea mays full-length cDNA clone ZM_BFc0120A04 mRNA, complete cds.
GenBankKJ7280190.0KJ728019.1 Zea mays clone pUT6155 NAC transcription factor (NAC12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820240.10.0NAC domain-containing protein 53-like
TrEMBLA0A2S3I4R10.0A0A2S3I4R1_9POAL; Uncharacterized protein
TrEMBLA0A2T7DAU20.0A0A2T7DAU2_9POAL; Uncharacterized protein
STRINGPavir.Fa00048.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-82NAC domain containing protein 2