PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG333000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 303aa    MW: 32450.3 Da    PI: 7.0177
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG333000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09142189455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+  Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  Pavir.6NG333000.2.p 142 SHSLSERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 189
                          799***********************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.70E-11136193No hitNo description
SuperFamilySSF474594.58E-17136204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16138202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.396138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-6142189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-10144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MADFSSHHSL LLKMPAALTN GHSPNLASLL FYGQNHGQGT TVNGNAASGT AAVMAEDASL  60
ESSSAVVGTS PQGSASPMDR KRKATEDSAT LSSAHSKDCN QEGKRKRGKK SNKEAEEKST  120
TDDEAPKGYI HVRARRGQAT DSHSLSERVR RERISERMRM LQALVPGCDK VTGKALILDE  180
IINYVQSLQN QVEFLSMRIA SMSPVLYGFG LDSDGLHDHA QKMGGMFQEA LAMPGPVLSQ  240
ASPAPSQAII ETTSTTPFSL QGQGAVSFSQ DNGSTYLMQQ AVGEPTRQEL LNQLVFNMCS  300
FQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.19980.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG333000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353771e-159BT035377.1 Zea mays full-length cDNA clone ZM_BFb0058D24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821629.10.0transcription factor bHLH137-like isoform X1
TrEMBLA0A2T7DA350.0A0A2T7DA35_9POAL; Uncharacterized protein
TrEMBLA0A3L6RHG30.0A0A3L6RHG3_PANMI; Uncharacterized protein
STRINGPavir.Fa00144.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-40bHLH family protein