PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG331900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 243aa MW: 25563.2 Da PI: 10.8859 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.6 | 2.3e-31 | 20 | 161 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk....rknr.atksgyWk 84 lppGfrF+Ptdeelvv+yL++k+ g +l++ vi+ v d+y+++Pwd+p++++a+e e yfF+ r g r at+sg+Wk Pavir.6NG331900.1.p 20 LPPGFRFRPTDEELVVQYLRRKALGVPLPA-AVIPVVrDLYSLDPWDIPAAADASEGEKYFFAVRPAGVGGGCsgklGGARaATASGRWK 108 79****************************.8899999***********88888888********99888443233344565899***** PP NAM 85 atgkdkevlsk.....kgelvglkktLvfykgrapkge....ktdWvmheyrl 128 gk+k+v+ ++ lvg+k+ ++f r++k++ + Wvmheyrl Pavir.6NG331900.1.p 109 PAGKEKPVVLPrpcggGSLLVGVKRAMTFAPRRKKKASsaalAAGWVMHEYRL 161 *********99899877777**********544444442234789******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.22E-40 | 16 | 199 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.112 | 20 | 199 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-20 | 21 | 161 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MESAPVLVRH AGGVAALRQL PPGFRFRPTD EELVVQYLRR KALGVPLPAA VIPVVRDLYS 60 LDPWDIPAAA DASEGEKYFF AVRPAGVGGG CSGKLGGARA ATASGRWKPA GKEKPVVLPR 120 PCGGGSLLVG VKRAMTFAPR RKKKASSAAL AAGWVMHEYR LAAPLHKNFT ARTVFSWQSR 180 GCSLAQAEGE WVVCRVFQRS SNSNRPRRRA TPAGGHAAAA SPSSSSTASC VTDGSDQEEV 240 SS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-26 | 20 | 205 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-26 | 20 | 205 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-26 | 20 | 205 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-26 | 20 | 205 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-26 | 20 | 205 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-26 | 20 | 205 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3961 | 0.0 | leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG331900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955506 | 1e-109 | EU955506.1 Zea mays clone 1534835 NAC domain-containing protein 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820406.1 | 1e-123 | NAC domain-containing protein 18-like isoform X1 | ||||
TrEMBL | A0A3L6RHL2 | 1e-126 | A0A3L6RHL2_PANMI; NAC domain-containing protein 18-like | ||||
STRING | Si014408m | 1e-121 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 4e-32 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG331900.1.p |