PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG303300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 151aa MW: 15844.3 Da PI: 11.4753 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.8 | 6.2e-09 | 34 | 73 | 12 | 54 |
AP2 12 rgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 + ++AeIr ps+ r r+++g+f+ a +Aa a++aa+ ++ Pavir.6NG303300.1.p 34 WAGYAAEIRIPSS---RSRVWIGRFDHALQAALAYDAAMFLFY 73 55578*****965...4*********************97665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 13.511 | 21 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.0E-7 | 21 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-9 | 33 | 86 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-14 | 33 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MASSAPTSGP AAGAQSPRVH QRRGLAASGC TGTWAGYAAE IRIPSSRSRV WIGRFDHALQ 60 AALAYDAAMF LFYGQKLPKL RRYNFPATPR PNVPEVVRKG LTVANVKAIA EKHGRSFGHF 120 LPLPPAPMIP AAPPAVAPSQ MAEAGGAAAS M |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG303300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822467.1 | 4e-56 | ethylene-responsive transcription factor ABI4-like | ||||
TrEMBL | A0A2S3I3V5 | 1e-54 | A0A2S3I3V5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb02057.1.p | 8e-60 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 5e-08 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG303300.1.p |