PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG300700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 1094aa    MW: 121422 Da    PI: 6.5114
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG300700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.31.1e-21132233199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++   W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F 
  Pavir.6NG300700.1.p 132 FCKTLTASDTSTHGGFSVPRRAAERIfphldfsM-QPPA-QELQARDLHDSIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI 219
                          99*****************************954.4444.49************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                          +d   +++l+++++r+
  Pavir.6NG300700.1.p 220 RD--ARQQLLLGIRRA 233
                          54..566679999987 PP
2Auxin_resp119.23.4e-39258341183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+++s F+v+YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++gvsd+dpvrW+nS+Wr+++
  Pavir.6NG300700.1.p 258 AAHAAASNSQFTVFYNPRASPSEFVIPFAKYQKAVYsNQLSLGMRFRMMFETEESGTRRYMGTITGVSDMDPVRWKNSQWRNIQ 341
                          79*********************************989*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.23E-40123261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-38125247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-17131221No hitNo description
PROSITE profilePS5086311.462132234IPR003340B3 DNA binding domain
PfamPF023621.1E-19132233IPR003340B3 DNA binding domain
SMARTSM010192.3E-19132234IPR003340B3 DNA binding domain
PfamPF065073.6E-34258341IPR010525Auxin response factor
PfamPF023091.5E-99721060IPR033389AUX/IAA domain
PROSITE profilePS5174525.1019751059IPR000270PB1 domain
SuperFamilySSF542773.79E-89791054No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1094 aa     Download sequence    Send to blast
MAAPGTSSGG AGGEGGGGGT KVNQELWYAC AGPLVALPPA GSLVVYFPQG HSEQVASSMQ  60
KDADAKIPSY PNLPSKLICI LSSVTMHADP DTDEVYARMT LQPVNNVTQC DKETLLASEL  120
ALKQTRPLTE FFCKTLTASD TSTHGGFSVP RRAAERIFPH LDFSMQPPAQ ELQARDLHDS  180
IWTFRHIYRG QPKRHLLTTG WSLFVSGKRL LAGDSVLFIR DARQQLLLGI RRANRQPVNL  240
SSSVLSSDSM HIGILASAAH AAASNSQFTV FYNPRASPSE FVIPFAKYQK AVYSNQLSLG  300
MRFRMMFETE ESGTRRYMGT ITGVSDMDPV RWKNSQWRNI QVAWDEAAPS ERRTRVSLWE  360
IEPVIAPFFI YPSPLFTAKR PRQPGITDDE TSDMENLFKR TMPWFGEEIY KKDLNTQNNL  420
VPGLSLVQWM QQNPSLTSTV GQPELLNSLA GKPVQTLAAA DLSRQISFQP QFLQQNNIQF  480
NTSLLPPQNQ QTEQLAKVIA TPNQSGSVMV SQKVVQDCNP EQKQHAITQP VQGNQPMKSV  540
AQPQFVVQNQ LLQPQVILQA QPQQSQVIVQ AQIQQQPLVQ NHTILQSGTQ QIHLLQQQQP  600
HLQRQPLQVQ QSVQEQQQIK IQPIQVPNDM NMITQLSDHQ MKIQLLKALQ PQQPLVMEQQ  660
KMILDLQHQT VNSNSQSSAQ QCAQVGGMHN SNTIQYLTQQ KTQPHQPIQD FPGNAASVAN  720
PEIATSMGAR FLHVPGGVQS LKTEDVPSSS TSPPTNNNPV LSQSVPCSSK DKSLLAVAKT  780
PQSSAIVSPT LEQGMKPYES IQQMVMIPKM AEQKPGTRQD YVNNTQMDYL DTSSSANSVC  840
LSQADGSLHQ NFPSSSFNQH QLLRETVPDS EFEVTDPGNN FLFGANIDGH LESLNADALL  900
ANNFETEKYM DQMPGHGISD YISSKDSQQE LSSSMISHSF GVAEIAFNSI DSSINDTPFL  960
NRNSRPPRPA HQRIRTYTKV HKRGAVGRSI DINQYSGYDE LKHDVARMFG IEGQLSDQNR  1020
GGWKLVYEDH EKDVLLVGDD PWEDFVNCIR CIRILSPQEE MQMRLASDFG DSFLPNQACS  1080
SSDGVHPWRV SGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1582236251388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.158160.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG300700.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820393.10.0auxin response factor 21-like isoform X1
TrEMBLA0A2T7D9L10.0A0A2T7D9L1_9POAL; Auxin response factor
STRINGPavir.Fb01896.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19