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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pavir.6NG253600.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family | MYB | ||||||||
| Protein Properties | Length: 251aa MW: 26886.6 Da PI: 9.3557 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 56.4 | 6.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEde+lv +++ +G g+W++ ++ g+ R++k+c++rw +yl
Pavir.6NG253600.1.p 14 KGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61
79******************************99************97 PP
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| 2 | Myb_DNA-binding | 53.5 | 5.5e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T +Ede ++++++ lG++ W++Ia ++ gRt++++k++w+++
Pavir.6NG253600.1.p 67 RGNFTDDEDEVIIRLHAILGNK-WSLIAGQLP-GRTDNEIKNYWNTH 111
89********************.*********.************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 17.186 | 9 | 61 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 4.12E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 7.6E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 1.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 1.93E-11 | 16 | 61 | No hit | No description |
| PROSITE profile | PS51294 | 27.558 | 62 | 116 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 1.7E-27 | 65 | 116 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 1.0E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 1.1E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 6.88E-12 | 69 | 112 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 251 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDERLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY 60 LRPDLKRGNF TDDEDEVIIR LHAILGNKWS LIAGQLPGRT DNEIKNYWNT HIKRKLLARG 120 IDPQTHRPLG SAAAAAAAPG VAAHRAPALL HPATAVPALA AAKPSPAASS SDDGARSSST 180 STSTGKARCP DLNLDLSVGL PPAADTPSSQ PVCLCYRLGL RAGEACGCQA DKPGPQGFRY 240 FRPLEQGQYI * |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1a5j_A | 2e-29 | 14 | 116 | 7 | 108 | B-MYB |
| Search in ModeBase | ||||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | TISSUE SPECIFICITY: Widely expressed at low level. Highly expressed in siliques. Weakly expressed in seedlings, young and mature leaves, cauline leaves, stems, flower buds and roots. {ECO:0000269|PubMed:9839469}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Pavir.6NG253600.1.p |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | EF372521 | 0.0 | EF372521.1 Saccharum officinarum MYB protein mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025807836.1 | 1e-142 | myb-related protein 308-like | ||||
| Swissprot | Q9SZP1 | 1e-94 | MYB4_ARATH; Transcription repressor MYB4 | ||||
| TrEMBL | A0A2T7EDG5 | 1e-141 | A0A2T7EDG5_9POAL; Uncharacterized protein | ||||
| STRING | ORUFI05G18670.1 | 1e-132 | (Oryza rufipogon) | ||||
| STRING | OS05T0429900-01 | 1e-132 | (Oryza sativa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP116 | 37 | 448 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38620.1 | 8e-88 | myb domain protein 4 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Pavir.6NG253600.1.p |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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