PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG205100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 149aa MW: 15276.4 Da PI: 10.8676 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.0004 | 107 | 129 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F L H+r+H Pavir.6NG205100.1.p 107 HQCHVCGLGFEMGQALGGHMRRH 129 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 6.8E-10 | 48 | 72 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.96 | 48 | 70 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 6.4E-6 | 48 | 70 | No hit | No description |
PROSITE profile | PS50157 | 9.93 | 48 | 75 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 50 | 70 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.4E-6 | 102 | 129 | No hit | No description |
Pfam | PF13912 | 4.2E-10 | 106 | 132 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.31 | 107 | 129 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.764 | 107 | 134 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 109 | 129 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MTKHPRDAAA GDVTLSLALS LGGLHAGEHG ASKRPRRAAG GGGGDGEFVC KTCSRAFASF 60 QALGGHRTSH LRGRHGLALG MPAAAPAAKQ QPASKDPKKQ QPAASHHQCH VCGLGFEMGQ 120 ALGGHMRRHR EEAAATAQAP PVLLQLFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG205100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU976142 | 7e-33 | EU976142.1 Zea mays clone 676912 zinc finger DNA-binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466195.1 | 3e-53 | zinc finger protein ZAT12 | ||||
TrEMBL | A0A3L6TJ87 | 1e-57 | A0A3L6TJ87_PANMI; Zinc finger protein ZAT8-like | ||||
STRING | Pavir.J00893.1.p | 1e-100 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 5e-18 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG205100.1.p |