PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG180900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 226aa MW: 24042.3 Da PI: 7.523 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39.2 | 9.2e-13 | 18 | 44 | 2 | 28 |
---SHHHHHHHHHHHHHHHHHHHHHHH CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELS 28 rie++ rqv fskRr+g++KKA+ELS Pavir.6NG180900.1.p 18 RIESDEARQVCFSKRRAGLFKKASELS 44 8*************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.568 | 9 | 44 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.2E-9 | 9 | 55 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-14 | 9 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-9 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-13 | 18 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-9 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MAPPRRPSMG LQKIEIRRIE SDEARQVCFS KRRAGLFKKA SELSSAAPMS PPSSFPLPAF 60 SFGHPSVESI LDRFLDTSPE AGAGLSSVGD RAISELNLQY GELREQLDAE KVRQERADET 120 IRKERAARSQ AMAWLNADLG VMGYDDLVAF WGSLIGVQAA VAASADQVLR DALLVGRRGR 180 QPPQLASGAA FDVAAFGVGM HPPPGLAGVD RNGFGVQATI LGPSI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG180900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806827.1 | 1e-125 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A2S3HD09 | 1e-124 | A0A2S3HD09_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EG15 | 1e-124 | A0A2T7EG15_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb00782.1.p | 1e-160 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-13 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG180900.1.p |