PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG172600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 619aa    MW: 70148.3 Da    PI: 6.238
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG172600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.6e-103460127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++++ C++++++G C+yG++C F+H+p
  Pavir.6NG172600.1.p 34 PGEPDCSNYLKFGRCRYGSKCMFNHPP 60
                         5789*********************96 PP
2zf-CCCH22.22.4e-0784109126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ++++ C+++ ++G Ck+  +C+F+H+
  Pavir.6NG172600.1.p  84 PGEPDCSHYVKFGSCKFEMNCRFNHP 109
                          5789*********************8 PP
3zf-CCCH35.91.2e-11143167226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +t lC+++++ G+Ck+G++CkF+H+
  Pavir.6NG172600.1.p 143 GTGLCSYYMQKGICKFGSNCKFHHP 167
                          5789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.3283361IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-53360IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-73560IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-53761IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-43958IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.28183111IPR000571Zinc finger, CCCH-type
SMARTSM003560.01783110IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-485109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-7141168IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-6141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.206141169IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9143167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5144166IPR000571Zinc finger, CCCH-type
PfamPF030048.2E-6375473IPR004252Probable transposase, Ptta/En/Spm, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MDSKDDGQVP KPTEALWHAA AGEEPELVVH SQRPGEPDCS NYLKFGRCRY GSKCMFNHPP  60
KPWAGQWRAG EKQGQQVAEY PRRPGEPDCS HYVKFGSCKF EMNCRFNHPS RKQVYFPAGA  120
CKCNHHEIEE VRLNSLGLPL RTGTGLCSYY MQKGICKFGS NCKFHHPNRS ESEQEKLNAD  180
SQGSSQQNFY SILGDIIKPD SDLSLRHAPP PLDLPVPSYL LQQSSKGKED KSFSLTQPRQ  240
VYSCPEQSGY QQLADSHFEP AKQVRYTRDQ LLQQREKTQQ LVDVSKDILE LKQCIVMELH  300
GEDYSWPNND SNVHTLSYHQ YDLADRRERH PRSTAQIPEV ASEEKYWDNI DEEKGSYGTS  360
GKQEQFCKHD QLGCFEFDSK PQDKCIKNKL NHEKVQFQQR TGSQCYIAKT YVVKQDKYKD  420
TEPTAIDLFK ETHCSSKIGF TESVKKAIDD MEAIVAEPEH DGQDVKSSTD AISEVLPQSS  480
KFLQNVGIMS SSKSSTRVGV SSKVQELEAQ LETAKQEKAE LWQEMDSLKL QAQESESTMA  540
KQSHEVERLK DIMKSQGQQS EAAMAKQLEQ IESLKKTVQY CSGFLGQMIT IAASICSNDN  600
HCCLNLLQSR EEDSNVTD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.193640.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG172600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A9CJF81e-110A0A0A9CJF8_ARUDO; Uncharacterized protein
STRINGPavir.Fb00578.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143301322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.13e-31zinc finger protein 1