PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG138600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 306aa    MW: 33821.6 Da    PI: 6.5959
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG138600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.23e-27249656128
                  NAM  56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +e yfF++r +ky +g r++rat+ gyWk+tgkdk+v+ ++g+lvg +ktLvfy+grap+gekt W mhey++
  Pavir.6NG138600.2.p  24 HEGYFFCTRGSKYLSGVRARRATRCGYWKSTGKDKAVHGRDGRLVGRRKTLVFYRGRAPRGEKTGWAMHEYAM 96 
                          477********************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.3061120IPR003441NAC domain
SuperFamilySSF1019411.83E-3024120IPR003441NAC domain
PfamPF023653.5E-132695IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAASPRRPSA TSTSTSPSRG ITCHEGYFFC TRGSKYLSGV RARRATRCGY WKSTGKDKAV  60
HGRDGRLVGR RKTLVFYRGR APRGEKTGWA MHEYAMGERS SSALLGGAQS EWVICKVFMR  120
KHPRGNERKV TTEETVHDQD STPGHLLPMV SVPDGCDGHE QEVAPPAAAT DSQHTISRSG  180
AHVMEGNEKD HRQQQQQMVH EELLMIDHHG WSGASPSWFN HDDWFNHDDQ LGTHCSALPV  240
MQMQPDDADY YLPALLESDG CDDLPNDAGS GLLDTGGEVT RHAEMITSAA IDPLHLDCLY  300
WNFGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-201712261170Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG138600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822427.11e-143NAC domain-containing protein 79-like
TrEMBLA0A1E5UJH11e-142A0A1E5UJH1_9POAL; NAC domain-containing protein 100
STRINGPavir.J11705.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-35Arabidopsis NAC domain containing protein 87