PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG125900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 348aa    MW: 35590 Da    PI: 7.8752
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG125900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.43.9e-10121142223
                          --SS-EEEEEEE--TT-SS-EE CS
                 WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                          +Dg+ WrKYGqKe+++s++prs
  Pavir.6NG125900.1.p 121 EDGHVWRKYGQKEIQNSPYPRS 142
                          8********************8 PP
2WRKY40.17.5e-131531961959
                          SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY  19 efprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++ rsYYrCt++   gC++k++v+rs++dp+  +i Y geH+++
  Pavir.6NG125900.1.p 153 RVCRSYYRCTHSsgqGCKAKRQVQRSETDPSKHVIAYYGEHTCR 196
                          578********99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-23115196IPR003657WRKY domain
PROSITE profilePS5081117.947115193IPR003657WRKY domain
SuperFamilySSF1182901.44E-18118196IPR003657WRKY domain
SMARTSM007746.8E-30120197IPR003657WRKY domain
PfamPF031065.1E-17121196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAPSGGDVPV ERAAAAANDL VEARDGAAAL RAFLLELDDQ RAPWAQRVVD GVLSRLSSAM  60
SALDVGGAAA GGRSPATGSG SGGASRPQQS VSYSSGNTNK KRSFSRRSQR PSDKKITATL  120
EDGHVWRKYG QKEIQNSPYP RSQDVNACAA RARVCRSYYR CTHSSGQGCK AKRQVQRSET  180
DPSKHVIAYY GEHTCRDHST IPLAVHAAGA APDRANNLIS FGHSGANDNA AATGAASSSQ  240
YLAMGRSTIG EHQLSTSWCT SDDMFSSSAG SFMHVDELIS AVVGSAGVTS TATAGSSALD  300
RGGLGGMAGG GGGNASFPPS PNGLAGFVVG SLGSIGGDDD DLFSMDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20116196469OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG125900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796867.11e-179WRKY transcription factor 55-like
TrEMBLA0A2T7CD131e-180A0A2T7CD13_9POAL; Uncharacterized protein
STRINGPavir.J05812.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139812526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-17WRKY DNA-binding protein 70