PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG100800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 238aa MW: 27691.6 Da PI: 9.9911 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.6 | 1.1e-18 | 139 | 228 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +t+s+v+ +l lp +f++++ + +++ t+tl+de+ +++ + +++ + l++GW++F+ +++L +gD +vF+l++r++f Pavir.6NG100800.1.p 139 FLKPMTQSHVTGGFWLGLPTPFCRKYL-P-KRDETITLKDEEDDEFDTLY--LNRKMG--LSAGWRGFAIDHKLVDGDCLVFQLIERTKF 222 89************************5.3.35669***************..777755..9************************99999 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v + r Pavir.6NG100800.1.p 223 --KVYIKR 228 ..666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.67E-23 | 132 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-21 | 134 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.12E-27 | 137 | 228 | No hit | No description |
Pfam | PF02362 | 1.5E-16 | 139 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.111 | 139 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-19 | 139 | 230 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGKAQRKEMA ETVSYEEQRR RQVEANKRKL EELQLHHLSA ALREAAAKPS PAKKRKARPP 60 RDAAVEPLRR SGRVANLPEK PKYREEVLDF GRKVRSSRTF RSWRKDLVDR VYATDEERSH 120 AITKAEELVD ELGSRFPIFL KPMTQSHVTG GFWLGLPTPF CRKYLPKRDE TITLKDEEDD 180 EFDTLYLNRK MGLSAGWRGF AIDHKLVDGD CLVFQLIERT KFKVYIKRAS SYHEDEE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5687 | 0.0 | callus| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG100800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820060.1 | 1e-147 | B3 domain-containing protein Os06g0194400-like | ||||
Swissprot | Q69V36 | 1e-116 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A2S3I114 | 1e-146 | A0A2S3I114_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb00845.1.p | 1e-174 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 3e-57 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG100800.1.p |
Publications ? help Back to Top | |||
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